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Research: Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
- Florian Caiment,
- Carole Charlier,
- Tracy Hadfield,
- Noelle Cockett,
- Michel Georges,
- and Denis Baurain
Genome Res. December 2010 20: 1651-1662; Published in Advance October 13, 2010, doi:10.1101/gr.108787.110
...on 390 kb of contiguous sequence available in both bovine and sheep indicates a possible loss of ;6% sensitivity but not of specificity. Reanalyzing the sequence data with the ovine referencemay thus increase the number of detected miRNAs. Within the DLK1–GTL2 domain, six known miRNA precursors were...
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LETTER: Computational and experimental identification of novel human imprinted genes
- Philippe P. Luedi,
- Fred S. Dietrich,
- Jennifer R. Weidman,
- Jason M. Bosko,
- Randy L. Jirtle,
- and Alexander J. Hartemink
Genome Res. December 2007 17: 1723-1730; Published in Advance November 30, 2007, doi:10.1101/gr.6584707
.... , Jaillon, O. , Shay, T. , Weis-Senbach, J. , Cockett, N. , Gyapay, G. , et al. ( 2001 ) Human-ovine comparative sequencing of a 250-kb imprinted domain encompassing the callipyge (clpg) locus and identification of six imprinted transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8 . Genome Res. 11 : 850...
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LETTER: Callipyge mutation affects gene expression in cis: A potential role for chromatin structure
- Susan K. Murphy,
- Catherine M. Nolan,
- Zhiqing Huang,
- Katerina S. Kucera,
- Brad A. Freking,
- Timothy P.L. Smith,
- Kreg A. Leymaster,
- Jennifer R. Weidman,
- and Randy L. Jirtle
Genome Res. March 2006 16: 340-346; Published in Advance January 13, 2006, doi:10.1101/gr.4389306
...and identification of six imprinted transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11 , and MEG8. Genome Res. 11 : 850 –862. ↵ Cockett, N.E., Jackson, S.P., Shay, T.L., Nielsen, D., Moore, S.S., Steele, M.R., Barendse, W., Green, R.D., and Georges, M. 1994 . Chromosomal localization of the callipyge gene in sheep...
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LETTER: Identification of the Single Base Change Causing the Callipyge Muscle Hypertrophy Phenotype, the Only Known Example of Polar Overdominance in Mammals
- Brad A. Freking,
- Susan K. Murphy,
- Andrew A. Wylie,
- Simon J. Rhodes,
- John W. Keele,
- Kreg A. Leymaster,
- Randy L. Jirtle,
- and Timothy P.L. Smith
Genome Res. October 1, 2002 12: 1496-1506; Published in Advance September 13, 2002, doi:10.1101/gr.571002
..., and downstream enhancer sequences. Charlier et al. (2001b) reported that the homologous imprinted domain in sheep contains the imprinted transcripts DAT, PEG11, antiPEG11 , and MEG8 , in addition to DLK1 and MEG3 . The imprint status of the first four of these genes in humans is unknown. The CLPG genotype status...
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Methods: Genome-wide prediction of imprinted murine genes
- Philippe P. Luedi,
- Alexander J. Hartemink,
- and Randy L. Jirtle
Genome Res. June 2005 15: 875-884; doi:10.1101/gr.3303505
...., Wagenaar, D., Karim, L., Berghmans, S., Jaillon, O., Shay, T., Weissenbach, J., Cockett, N., Gyapay, G., et al. 2001 . Human-ovine comparative sequencing of a 250-kb imprinted domain encompassing the callipyge (clpg) locus and identification of six imprinted transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11...
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ARTICLE: Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
- Timothy Ravasi,
- Harukazu Suzuki,
- Ken C. Pang,
- Shintaro Katayama,
- Masaaki Furuno,
- Rie Okunishi,
- Shiro Fukuda,
- Kelin Ru,
- Martin C. Frith,
- M. Milena Gongora,
- Sean M. Grimmond,
- David A. Hume,
- Yoshihide Hayashizaki,
- and John S. Mattick
Genome Res. January 2006 16: 11-19; Published in Advance December 12, 2005, doi:10.1101/gr.4200206
...imprinted domain encompassing the callipyge (clpg) locus and identification of six imprinted transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8. Genome Res. 11 : 850 -862. ↵ Cheng, J., Kapranov, P., Drenkow, J., Dike, S., Brubaker, S., Patel, S., Long, J., Stern, D., Tammana, H., Helt, G., et al. 2005...

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