Searching journal content for articles similar to Chance et al. 14 (10b): 2145.

Displaying results 1-10 of 860

For checked items

view abstracts
download to citation manager

Select this article
Method: Integration of high-throughput proteomic data and complementary omics layers with PriOmics
- Robin Kosch,
- Katharina Limm,
- Annette M. Staiger,
- Nadine S. Kurz,
- Nicole Seifert,
- Bence Oláh,
- Stefan Solbrig,
- Viola Poeschel,
- Gerhard Held,
- Marita Ziepert,
- Norbert Schmitz,
- Emil Chteinberg,
- Reiner Siebert,
- Rainer Spang,
- Helena U. Zacharias,
- German Ott,
- Peter J. Oefner,
- and Michael Altenbuchinger
Genome Res. January 2026 36: 197-213; Published in Advance November 18, 2025, doi:10.1101/gr.279487.124
..., Germany; 12Department of Statistical Bioinformatics, University of Regensburg, 93053 Regensburg, Germany ↵13 These authors contributed equally to this work. Corresponding author: robin.kosch@protonmail.comAbstractHigh-throughput bottom-up proteomic data cover thousands of proteins and related co- and post...
Select this article
Method: A high-throughput screening method for selecting feature SNPs to evaluate breed diversity and infer ancestry
- Meilin Zhang,
- Heng Du,
- Yu Zhang,
- Yue Zhuo,
- Zhen Liu,
- Yahui Xue,
- Lei Zhou,
- Sixuan Zhou,
- Wanying Li,
- and Jian-Feng Liu
Genome Res. August 2025 35: 1875-1886; Published in Advance July 15, 2025, doi:10.1101/gr.280176.124
...structure analyses, genetic diversity evaluation, and ancestry estimation (Kennedy et al. 2003; Zimmerman et al. 2020). Simultaneously, the latest advances in SNP high-throughput arrays and WGS facilitate the SNPs applied in the usual genetic analyses. However, compared with WGS, SNP arrays were primarily...
OPEN ACCESS ARTICLE
Select this article
Method: CRISPR-Cas9-based repeat depletion for high-throughput genotyping of complex plant genomes
- Marzia Rossato,
- Luca Marcolungo,
- Luca De Antoni,
- Giulia Lopatriello,
- Elisa Bellucci,
- Gaia Cortinovis,
- Giulia Frascarelli,
- Laura Nanni,
- Elena Bitocchi,
- Valerio Di Vittori,
- Leonardo Vincenzi,
- Filippo Lucchini,
- Kirstin E. Bett,
- Larissa Ramsay,
- David James Konkin,
- Massimo Delledonne,
- and Roberto Papa
Genome Res. May 2023 33: 787-797; Published in Advance May 1, 2023, doi:10.1101/gr.277628.122
....delledonne@univr.it, r.papa@staff.univpm.itAbstractHigh-throughput genotyping enables the large-scale analysis of genetic diversity in population genomics and -wide association studies that combine the genotypic and phenotypic characterization of large collections of accessions. Sequencing-based approaches...
OPEN ACCESS ARTICLE
Select this article
Method: A scalable computational framework for predicting gene expression from candidate cis-regulatory elements
- Qinhu Zhang,
- Siguo Wang,
- Zhipeng Li,
- Wenzheng Bao,
- Wenjian Liu,
- and De-Shuang Huang
Genome Res. February 2026 36: 361-374; Published in Advance January 16, 2026, doi:10.1101/gr.281219.125
...insights into the origins of human diseases. However, epigenomic data, such as chromatin accessibility and histone modifications, enhance the dynamic characteristics of CREs to gene regulation, making it more challenging to decipher the relationships between CREs and gene expression.High-throughput...
OPEN ACCESS ARTICLE
Select this article
Review: k-mer approaches for biodiversity genomics
- Katharine M. Jenike,
- Lucía Campos-Domínguez,
- Marilou Boddé,
- José Cerca,
- Christina N. Hodson,
- Michael C. Schatz,
- and Kamil S. Jaron
Genome Res. February 2025 35: 219-230; Published in Advance January 31, 2025, doi:10.1101/gr.279452.124
...available s displays a wonderful diversity in size, composition, and structure and is quickly expanding thanks to several global biodiversity genomics initiatives. However, sequencing of s, even with the latest technologies, can still be challenging for both technical (e.g., small physical size...
OPEN ACCESS ARTICLE
Select this article
Method: Deep structural clustering reveals hidden systematic biases in RNA sequencing data
- Qiang Su,
- Yi Long,
- Deming Gou,
- Junmin Quan,
- Xiaoming Zhou,
- and Qizhou Lian
Genome Res. November 2025 35: 2563-2577; Published in Advance September 19, 2025, doi:10.1101/gr.280713.125
...biological functions (Le and Maizel 1997; Cheng et al. 2001). The VAE-GMM k-mer clustering model, by combining deep neural networks with probabilistic clustering and dimensionality reduction techniques, offers a promising framework for decoding high-dimensional RNA sequence structures and uncovering latent...
Select this article
Method: High-throughput single-molecule telomere characterization
- Jennifer McCaffrey,
- Eleanor Young,
- Katy Lassahn,
- Justin Sibert,
- Steven Pastor,
- Harold Riethman,
- and Ming Xiao
Genome Res. November 2017 27: 1904-1915; Published in Advance October 12, 2017, doi:10.1101/gr.222422.117
.... An in vitro CRISPR/Cas9 RNA-directed nickase system directs the specific labeling of human (TTAGGG)n DNA tracts in s that have also been barcoded using a separate nickase enzyme that recognizes a 7bp motif -wide. High-throughput imaging and analysis of large DNA single molecules from s labeled in this fashion...
Select this article
Method: Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics
- Alexey Vorobev,
- Marion Dupouy,
- Quentin Carradec,
- Tom O. Delmont,
- Anita Annamalé,
- Patrick Wincker,
- and Eric Pelletier
Genome Res. April 2020 30: 647-659; Published in Advance March 23, 2020, doi:10.1101/gr.253070.119
....3% of the UCYN-A1 (Fig. 5). The estimated completeness of the UCYN-A computed based on a set of 139 bacterial-specific single-copy core genes (Campbell et al. 2013) was 82.7% for MGT-29 and 42.4% for MGT-176. The ANI value between MGT-29 and UCYN-A1 isolate ALOHA was 99.7%, which indicates a high genomic...
Select this article
Perspective: Applications of single-cell genomics and computational strategies to study common disease and population-level variation
- Benjamin J. Auerbach,
- Jian Hu,
- Muredach P. Reilly,
- and Mingyao Li
Genome Res. October 2021 31: 1728-1741; doi:10.1101/gr.275430.121
...the effect of perturbations in humans to improve health will require an unmasking of the complex regulation of the cell and improved understanding of how cell interactions shape human physiology.The advent of high-throughput single-cell genomics technologies has brought the scientific community one step...
OPEN ACCESS ARTICLE
Select this article
Method: Single-nucleus CUT&RUN elucidates the function of intrinsic and genomics-driven epigenetic heterogeneity in head and neck cancer progression
- Howard J. Womersley,
- Daniel Muliaditan,
- Ramanuj DasGupta,
- and Lih Feng Cheow
Genome Res. January 2025 35: 162-177; Published in Advance December 2, 2024, doi:10.1101/gr.279105.124
...monomers and dimers removed with a second set of SPRI bead treatment in preparation for high-throughput sequencing (Methods).View larger version: In this window In a new window Figure 1. Schematic representation of overall workflow and quality control of snCUT&RUN. (A) Schematic overview of sn...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Chance et al. 14 (10b): 2145.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: