Searching journal content for articles similar to Casas-Vila et al. 27 (7): 1273.

Displaying results 1-10 of 188

For checked items

view abstracts
download to citation manager

Select this article
Research: Transposable elements contribute to the evolution of host shift–related genes in cactophilic Drosophila species
- Daniel Siqueira de Oliveira,
- Anaïs Larue,
- William Vilas Boas Nunes,
- Francois Sabot,
- Alejandra Bodelón,
- María Pilar García Guerreiro,
- Cristina Vieira,
- and Claudia Marcia Aparecida Carareto
Genome Res. March 2026 36: 487-505; Published in Advance February 10, 2026, doi:10.1101/gr.280463.125
...-derived sequences (Lipatov et al. 2005). A recent transcriptome-wide study identified 327 genes in Drosophila melanogaster that generate chimeric transcripts across different populations (Oliveira et al. 2023). Among all genes, 76 generate chimeric transcripts from TE insertions that were present in one strain...
Select this article
Research: ISWI1 complex proteins facilitate developmental genome editing in Paramecium
- Aditi Singh,
- Lilia Häußermann,
- Christiane Emmerich,
- Emily Nischwitz,
- Brandon K.B. Seah,
- Falk Butter,
- Mariusz Nowacki,
- and Estienne C. Swart
Genome Res. January 2025 35: 93-108; Published in Advance November 14, 2024, doi:10.1101/gr.278402.123
...ISWI1 complex proteins facilitate developmental editing in Paramecium Aditi Singh1,5, Lilia Häußermann1,5, Christiane Emmerich1, Emily Nischwitz2, Brandon K.B. Seah1, Falk Butter2,3, Mariusz Nowacki4 and Estienne C. Swart1 1Max Planck Institute for Biology, 72076 Tübingen, Germany; 2Institute...
OPEN ACCESS ARTICLE
Select this article
Research: Population genomics reveals mechanisms and dynamics of de novo expressed open reading frame emergence in Drosophila melanogaster
- Anna Grandchamp,
- Lucas Kühl,
- Marie Lebherz,
- Kathrin Brüggemann,
- John Parsch,
- and Erich Bornberg-Bauer
Genome Res. June 2023 33: 872-890; Published in Advance July 13, 2023, doi:10.1101/gr.277482.122
...of de novo genes that emerged within a single species. We sequenced and assembled s with long-read technology and the corresponding transcriptomes from inbred lines of Drosophila melanogaster, derived from seven geographically diverse populations. We found line-specific neORFs in abundance but few ne...
Select this article
Method: Nematode gene annotation by machine-learning-assisted proteotranscriptomics enables proteome-wide evolutionary analysis
- Alejandro Ceron-Noriega,
- Miguel V. Almeida,
- Michal Levin,
- and Falk Butter
Genome Res. January 2023 33: 112-128; Published in Advance January 18, 2023, doi:10.1101/gr.277070.122
...data of the nematode C. briggsae, the fruit fly Drosophila melanogaster, the green land plant Arabidopsis thaliana, and the human H1-hESC cell line (Supplemental Table S5) using the same assembly workflows as applied in C. elegans. The C. elegans trained predictors showed very high accuracy...
Select this article
Research: tRNA-derived small RNAs are embedded in the gene regulatory network instructing Drosophila metamorphosis
- Junling Shi,
- Jiaqi Xu,
- Jun Ma,
- and Feng He
Genome Res. December 2023 33: 2119-2132; Published in Advance November 16, 2023, doi:10.1101/gr.278128.123
...are tightly controlled, raising the possibility that their breakdown products, tsRNAs, may provide a link between the overall translational status of a cell to specific changes in gene regulatory network. We hypothesize that Drosophila pupation, being a special developmental stage during which...
Select this article
Research: Transcriptional programs mediating neuronal toxicity and altered glial–neuronal signaling in a Drosophila knock-in tauopathy model
- Hassan Bukhari,
- Vanitha Nithianandam,
- Rachel A. Battaglia,
- Anthony Cicalo,
- Souvarish Sarkar,
- Aram Comjean,
- Yanhui Hu,
- Matthew J. Leventhal,
- Xianjun Dong,
- and Mel B. Feany
Genome Res. April 2024 34: 590-605; Published in Advance April 10, 2024, doi:10.1101/gr.278576.123
...Transcriptional programs mediating neuronal toxicity and altered glial–neuronal signaling in a Drosophila knock-in tauopathy model Hassan Bukhari1,2, Vanitha Nithianandam1,2, Rachel A. Battaglia1,2, Anthony Cicalo2,3,4, Souvarish Sarkar1, Aram Comjean5, Yanhui Hu5, Matthew J. Leventhal6,7, Xianjun...
OPEN ACCESS ARTICLE
Select this article
Research: Transposons contribute to the functional diversification of the head, gut, and ovary transcriptomes across Drosophila natural strains
- Marta Coronado-Zamora and
- Josefa González
Genome Res. September 2023 33: 1541-1553; Published in Advance October 4, 2023, doi:10.1101/gr.277565.122
...assembly that minimizes the potential sources of errors while identifying a comprehensive set of gene–TE chimeras. We applied this method to the head, gut, and ovary dissected from five Drosophila melanogaster natural strains, with individual reference s available. We found that ∼19% of body part...
Select this article
Research: Systems genetics of the Drosophila metabolome
- Shanshan Zhou,
- Fabio Morgante,
- Matthew S. Geisz,
- Junwu Ma,
- Robert R.H. Anholt,
- and Trudy F.C. Mackay
Genome Res. March 2020 30: 392-405; Published in Advance November 6, 2019, doi:10.1101/gr.243030.118
...Drosophila melanogaster genetic reference panel lines. Genome Res 24: 1193–1208. doi:10.1101/gr.171546.113 ↵Ibrahim SM, Gold R. 2005. Genomics, proteomics, metabolomics: what is in a word for multiple sclerosis? Curr Opin Neurol 18: 231–235. doi:10.1097/01.wco.0000169738.06664.3b ↵Illig T, Gieger C, Zhai G...
OPEN ACCESS ARTICLE
Select this article
Research: A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster
- Ge Gao,
- Maria D. Vibranovski,
- Li Zhang,
- Zheng Li,
- Ming Liu,
- Yong E. Zhang,
- Xinmin Li,
- Wenxia Zhang,
- Qichang Fan,
- Nicholas W. VanKuren,
- Manyuan Long,
- and Liping Wei
Genome Res. April 2014 24: 629-638; Published in Advance January 9, 2014, doi:10.1101/gr.165837.113
...in the main developmental stages in Drosophila melanogaster. Nucleic Acids Res 37: 4308–4314. ↵ Lifschytz E, Lindsley DL Lifschytz E, Lindsley DL. 1972. The role of X-chromosome inactivation during spermatogenesis. Proc Natl Acad Sci 69: 182–186. ↵ Liu J, Mercer JM, Stam LF, Gibson GC, Zeng ZB, Laurie CC Liu...
OPEN ACCESS ARTICLE
Select this article
Resource: The mRNA-bound proteome of the early fly embryo
- Hans-Hermann Wessels,
- Koshi Imami,
- Alexander G. Baltz,
- Marcin Kolinski,
- Anastasia Beldovskaya,
- Matthias Selbach,
- Stephen Small,
- Uwe Ohler,
- and Markus Landthaler
Genome Res. July 2016 26: 1000-1009; Published in Advance April 28, 2016, doi:10.1101/gr.200386.115
...of interest to Drosophila developmental biologists, but to scientists working on early embryogenesis in other model organisms.MethodsUV-crosslinking of D. melanogaster embryosAdult yw flies were fed with standard yeast paste and adult UPRT-expressing X490 flies with yeast paste containing 4-thiouracil. Staged...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Casas-Vila et al. 27 (7): 1273.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: