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Corrigendum: Corrigendum: MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals
- Keisha D. Carlson,
- Peter H. Sudmant,
- Maximilian O. Press,
- Evan E. Eichler,
- Jay Shendure,
- and Christine Queitsch
Genome Res. August 2015 25: 1244
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Research: Discovery and genotyping of structural variation from long-read haploid genome sequence data
- John Huddleston,
- Mark J.P. Chaisson,
- Karyn Meltz Steinberg,
- Wes Warren,
- Kendra Hoekzema,
- David Gordon,
- Tina A. Graves-Lindsay,
- Katherine M. Munson,
- Zev N. Kronenberg,
- Laura Vives,
- Paul Peluso,
- Matthew Boitano,
- Chen-Shin Chin,
- Jonas Korlach,
- Richard K. Wilson,
- and Evan E. Eichler
Genome Res. May 2017 27: 677-685; Published in Advance November 28, 2016, doi:10.1101/gr.214007.116
...samples. Am J Hum Genet 98: 116–126. ↵Carlson KD, Sudmant PH, Press MO, Eichler EE, Shendure J, Queitsch C. 2015. MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals. Genome Res 25: 750–761. ↵Chaisson MJ, Tesler G. 2012. Mapping single molecule...
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Research: Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana
- Maximilian O. Press,
- Rajiv C. McCoy,
- Ashley N. Hall,
- Joshua M. Akey,
- and Christine Queitsch
Genome Res. August 2018 28: 1169-1178; Published in Advance July 3, 2018, doi:10.1101/gr.231753.117
.... (Targeted) The 2046 STRs targeted for MIP capture. (Typed) STRs successfully genotyped in the Col-0 in a MIPSTR assay. Numbers above the bars indicate the proportion of targeted STRs in the relevant category that were successfully genotyped. (B) The distribution of allele counts across all genotyped STRs...
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Method: HD-Marker: a highly multiplexed and flexible approach for targeted genotyping of more than 10,000 genes in a single-tube assay
- Jia Lv,
- Wenqian Jiao,
- Haobing Guo,
- Pingping Liu,
- Ruijia Wang,
- Lingling Zhang,
- Qifan Zeng,
- Xiaoli Hu,
- Zhenmin Bao,
- and Shi Wang
Genome Res. December 2018 28: 1919-1930; Published in Advance November 8, 2018, doi:10.1101/gr.235820.118
...-based approach (MIPSTR) (Carlson et al. 2015). We demonstrated the feasibility of HD-Marker for targeted microsatellite genotyping, with the genotyping accuracy (90%–100%) comparable to existing methods (88%–98%) (Guilmatre et al. 2013; Duitama et al. 2014; Carlson et al. 2015). HD-Marker is potentially...
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Research: Tandem repeat variation in human and great ape populations and its impact on gene expression divergence
- Tugce Bilgin Sonay,
- Tiago Carvalho,
- Mark D. Robinson,
- Maja P. Greminger,
- Michael Krützen,
- David Comas,
- Gareth Highnam,
- David Mittelman,
- Andrew Sharp,
- Tomàs Marques-Bonet,
- and Andreas Wagner
Genome Res. November 2015 25: 1591-1599; Published in Advance August 19, 2015, doi:10.1101/gr.190868.115
...and length of the tandem repeat. Am J Hum Genet 62: 1408–1415. Carlson KD, Sudmant PH, Press MO, Eichler EE, Shendure J, Queitsch C. 2015. MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals. Genome Res 25: 750–761. CharronM, Chern J-Y,WrightWW. 2007...
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Method: A generic, cost-effective, and scalable cell lineage analysis platform
- Tamir Biezuner,
- Adam Spiro,
- Ofir Raz,
- Shiran Amir,
- Lilach Milo,
- Rivka Adar,
- Noa Chapal-Ilani,
- Veronika Berman,
- Yael Fried,
- Elena Ainbinder,
- Galit Cohen,
- Haim M. Barr,
- Ruth Halaban,
- and Ehud Shapiro
Genome Res. November 2016 26: 1588-1599; Published in Advance August 24, 2016, doi:10.1101/gr.202903.115
...barcodes [Lu et al. 2011]) were developed to enable lineage tracing in higher model organisms including mammals. However, being invasive, they cannot be applied to human research. More than a decade ago we suggested that somatic mutations that occur during cell division endow each cell in our body...

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