Searching journal content for articles similar to Cardoso-Moreira et al. 26 (6): 787.

Displaying results 1-10 of 165

For checked items

view abstracts
download to citation manager

Select this article
Research: Evolutionarily new genes in humans with disease phenotypes reveal functional enrichment patterns shaped by adaptive innovation and sexual selection
- Jian-Hai Chen,
- Patrick Landback,
- Deanna Arsala,
- Alexander Guzzetta,
- Shengqian Xia,
- Jared Atlas,
- Dylan Sosa,
- Yong E. Zhang,
- Jingqiu Cheng,
- Bairong Shen,
- and Manyuan Long
Genome Res. March 2025 35: 379-392; Published in Advance February 14, 2025, doi:10.1101/gr.279498.124
...; Van Oss and Carvunis 2019; Betrán and Long 2022; Zhang et al. 2022). New genes can be integrated into essential bioprocesses, such as transcriptional regulation, RNA synthesis, and DNA repair (Ciccarelli et al. 2005; Ding et al. 2021). In Drosophila species, lineage-specific genes may control the key...
OPEN ACCESS ARTICLE
Select this article
Research: Variation in mutation, recombination, and transposition rates in Drosophila melanogaster and Drosophila simulans
- Yiguan Wang,
- Paul McNeil,
- Rashidatu Abdulazeez,
- Marta Pascual,
- Susan E. Johnston,
- Peter D. Keightley,
- and Darren J. Obbard
Genome Res. April 2023 33: 587-598; Published in Advance April 10, 2023, doi:10.1101/gr.277383.122
...to ongoing selection, and levels of genetic load. However, even for key evolutionary model species such as Drosophila melanogaster and Drosophila simulans, few estimates of these parameters are available, and we have little idea of how rates vary between individuals, sexes, or populations. Knowledge...
OPEN ACCESS ARTICLE
Select this article
Research: Haploid selection drives new gene male germline expression
- Julia B. Raices,
- Paulo A. Otto,
- and Maria D. Vibranovski
Genome Res. July 2019 29: 1115-1122; Published in Advance June 20, 2019, doi:10.1101/gr.238824.118
...evolution of young Drosophila duplicate genes. Mol Biol Evol 34: 3089–3098. doi:10.1093/molbev/msx230 ↵Joseph SB, Kirkpatrick M. 2004. Haploid selection in animals. Trends Ecol Evol 19: 592–597. doi:10.1016/j.tree.2004.08.004 ↵Kaessmann H. 2010. Origins, evolution, and phenotypic impact of new genes. Genome...
Select this article
Method: Greater strength of selection and higher proportion of beneficial amino acid changing mutations in humans compared with mice and Drosophila melanogaster
- Ying Zhen,
- Christian D. Huber,
- Robert W. Davies,
- and Kirk E. Lohmueller
Genome Res. January 2021 31: 110-120; Published in Advance November 18, 2020, doi:10.1101/gr.256636.119
...selection in Drosophila. Smith and Eyre-Walker (2002) proposed a statistic, α, which is the proportion of nonsynonymous substitutions between species that can be attributed to positive selection. Their approach has found that at least 40% of nonsynonymous substitutions have been fixed by positive selection...
Select this article
Research: Population genomics reveals mechanisms and dynamics of de novo expressed open reading frame emergence in Drosophila melanogaster
- Anna Grandchamp,
- Lucas Kühl,
- Marie Lebherz,
- Kathrin Brüggemann,
- John Parsch,
- and Erich Bornberg-Bauer
Genome Res. June 2023 33: 872-890; Published in Advance July 13, 2023, doi:10.1101/gr.277482.122
...of de novo genes that emerged within a single species. We sequenced and assembled s with long-read technology and the corresponding transcriptomes from inbred lines of Drosophila melanogaster, derived from seven geographically diverse populations. We found line-specific neORFs in abundance but few ne...
Select this article
Research: The grasshopper genome reveals long-term gene content conservation of the X Chromosome and temporal variation in X Chromosome evolution
- Xinghua Li,
- Judith E. Mank,
- and Liping Ban
Genome Res. July 2024 34: 997-1007; Published in Advance August 5, 2024, doi:10.1101/gr.278794.123
...to Muller element F in Drosophila melanogaster (the ancestral fly X Chromosome; 55.6% of fly Muller F genes, chi-squared test, 1 d.f., P = 3.84 × 10−31) (Vicoso and Bachtrog 2013) despite 400 million years of divergence. Through functional enrichment analysis, we show that these conserved X-linked genes...
Select this article
Research: Damage-responsive elements in Drosophila regeneration
- Elena Vizcaya-Molina,
- Cecilia C. Klein,
- Florenci Serras,
- Rakesh K. Mishra,
- Roderic Guigó,
- and Montserrat Corominas
Genome Res. December 2018 28: 1852-1866; Published in Advance November 20, 2018, doi:10.1101/gr.233098.117
...; Hariharan and Serras 2017). In this study, we characterize the gene expression profiles and the map of regulatory elements that respond to cell death-induced regeneration throughout the recovery process of Drosophila wing imaginal discs.ResultsRegeneration: a burst of active transcriptionTo elucidate...
OPEN ACCESS ARTICLE
Select this article
Research: Trajectory mapping of the early Drosophila germline reveals controls of zygotic activation and sex differentiation
- Yi-Ru Li,
- Hsiao Wen Lai,
- Hsiao Han Huang,
- Hsing-Chun Chen,
- Sebastian D. Fugmann,
- and Shu Yuan Yang
Genome Res. June 2021 31: 1011-1023; Published in Advance April 15, 2021, doi:10.1101/gr.271148.120
...that showed substantial somatic expression as determined by the somatic cells included in the sexed sample (Supplemental Table S1, “Maternal soma-negative,” “Zygotic soma-negative”).The gene lists were subsequently validated with the embryonic in situ hybridization database of the Berkeley Drosophila Genome...
Select this article
Research: Less effective selection leads to larger genomes
- Tristan Lefébure,
- Claire Morvan,
- Florian Malard,
- Clémentine François,
- Lara Konecny-Dupré,
- Laurent Guéguen,
- Michèle Weiss-Gayet,
- Andaine Seguin-Orlando,
- Luca Ermini,
- Clio Der Sarkissian,
- N. Pierre Charrier,
- David Eme,
- Florian Mermillod-Blondin,
- Laurent Duret,
- Cristina Vieira,
- Ludovic Orlando,
- and Christophe Jean Douady
Genome Res. June 2017 27: 1016-1028; Published in Advance April 19, 2017, doi:10.1101/gr.212589.116
...of purifying selection is impaired by genetic drift (Lynch 2011; Lynch et al. 2011). Under this hypothesis, the evolution of GS would be controlled by the balance between the emergence of large-scale insertions and deletions (indels) and their fixation rate, which ultimately depends on the efficacy...
Select this article
Resource: Systematic detection of brain protein-coding genes under positive selection during primate evolution and their roles in cognition
- Guillaume Dumas,
- Simon Malesys,
- and Thomas Bourgeron
Genome Res. March 2021 31: 484-496; Published in Advance January 13, 2021, doi:10.1101/gr.262113.120
.... More nonsynonymous mutations than expected signifies positive selection, and fewer signifies selective constraint. We first estimated dN and dS for all 1:1 orthologous genes, because the evolutionary constraints on duplicated genes are relaxed (only the Y Chromosome was excluded from these analyses) (O...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Cardoso-Moreira et al. 26 (6): 787.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: