Searching journal content for articles similar to Cao et al. 29 (1): 40.

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Research: NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors
- Joseph D. Fleming,
- Giulio Pavesi,
- Paolo Benatti,
- Carol Imbriano,
- Roberto Mantovani,
- and Kevin Struhl
Genome Res. August 2013 23: 1195-1209; Published in Advance April 17, 2013, doi:10.1101/gr.148080.112
...). A summary of the interactions at promoters and enhancers is shown in Figure 7. The widespread partnership of NF-Y with a group of TFs (FOS, MYC, and E2Fs) that control cellular proliferation and play important roles in cancer are consistent with the importance of NF-Y for expression of growth...
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Research: KRAB zinc-finger proteins regulate endogenous retroviruses to sculpt germline transcriptomes and genome evolution
- Kai Otsuka,
- Akihiko Sakashita,
- So Maezawa,
- Richard M. Schultz,
- and Satoshi H. Namekawa
Genome Res. March 2025 35: 417-431; Published in Advance March 12, 2025, doi:10.1101/gr.279924.124
...Department of Molecular Biology, Keio University School of Medicine, Tokyo 160-8582, Japan; 5Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA Corresponding author: snamekawa@ucdavis.eduAbstractAs transposable elements (TEs) coevolved with the host , the host exploited...
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Research: Alu insertion variants alter gene transcript levels
- Lindsay M. Payer,
- Jared P. Steranka,
- Maria S. Kryatova,
- Giacomo Grillo,
- Mathieu Lupien,
- Pedro P. Rocha,
- and Kathleen H. Burns
Genome Res. December 2021 31: 2236-2248; Published in Advance November 19, 2021, doi:10.1101/gr.261305.120
...be epigenetically marked like enhancers including positioned phased nucleosomes, active histone marks including H3K4me1 and H3K27ac, enrichment upstream proximal to genes, and preferential long-range contacts with promoters (Su et al. 2014). A subset of Alu elements functions as enhancers for cell-cycle genes...
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Method: Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm
- Bo Zhang,
- Yan Zhou,
- Nan Lin,
- Rebecca F. Lowdon,
- Chibo Hong,
- Raman P. Nagarajan,
- Jeffrey B. Cheng,
- Daofeng Li,
- Michael Stevens,
- Hyung Joo Lee,
- Xiaoyun Xing,
- Jia Zhou,
- Vasavi Sundaram,
- GiNell Elliott,
- Junchen Gu,
- Taoping Shi,
- Philippe Gascard,
- Mahvash Sigaroudinia,
- Thea D. Tlsty,
- Theresa Kadlecek,
- Arthur Weiss,
- Henriette O’Geen,
- Peggy J. Farnham,
- Cécile L. Maire,
- Keith L. Ligon,
- Pamela A.F. Madden,
- Angela Tam,
- Richard Moore,
- Martin Hirst,
- Marco A. Marra,
- Baoxue Zhang,
- Joseph F. Costello,
- and Ting Wang
Genome Res. September 2013 23: 1522-1540; Published in Advance June 26, 2013, doi:10.1101/gr.156539.113
.... ↵ 17 Present address: Department of Urology, General Hospital of the People's Liberation Army (PLAGH), Haidian District, 100853 Beijing, China. Abstract DNA methylation plays key roles in diverse biological processes such as X chromosome inactivation, transposable element repression, genomic...
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Resource: Long noncoding RNAs in C. elegans
- Jin-Wu Nam and
- David P. Bartel
Genome Res. December 2012 22: 2529-2540; Published in Advance June 15, 2012, doi:10.1101/gr.140475.112
...their transcription (Rinn et al. 2007; Gupta et al. 2010; Tsai et al. 2010), and TP53COR1 (also known as lincRNA-p21) is induced by TP53 upon DNA damage or oncogenic stress and causes the widespread suppression of numerous genes by recruiting the repressor protein HNRNPK, thereby acting as a potential tumor...
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Research: Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints
- Manuel Irimia,
- Juan J. Tena,
- Maria S. Alexis,
- Ana Fernandez-Miñan,
- Ignacio Maeso,
- Ozren Bogdanović,
- Elisa de la Calle-Mustienes,
- Scott W. Roy,
- José L. Gómez-Skarmeta,
- and Hunter B. Fraser
Genome Res. December 2012 22: 2356-2367; Published in Advance June 21, 2012, doi:10.1101/gr.139725.112
...one or more regulatory elements. Chromosomal breakpoints in the intergenic region of the two genes are opposed by selection since it would affect the coordinated expression of the two genes. (B) Genomic regulatory block (GRB): A bystander gene (green) contains regulatory elements in its introns...

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