Searching journal content for articles similar to Cai et al. 11 (10): 1619.

Displaying results 1-10 of 11

For checked items

view abstracts
download to citation manager

Select this article
Methods: Pooled genomic indexing of rhesus macaque
- Aleksandar Milosavljevic,
- Ronald A. Harris,
- Erica J. Sodergren,
- Andrew R. Jackson,
- Ken J. Kalafus,
- Anne Hodgson,
- Andrew Cree,
- Weilie Dai,
- Miklos Csuros,
- Baoli Zhu,
- Pieter J. de Jong,
- George M. Weinstock,
- and Richard A. Gibbs
Genome Res. February 2005 15: 292-301; doi:10.1101/gr.3162505
...sequencing of individual BACs. Short-tag pooled genomic indexing (ST-PGI) further improves the economy of mapping by sequencing multiple, short, mapable tags within a single sequencing reaction. Shotgun sequencing of pooled BACs has been previously proposed in the context of the clone-array pooled shotgun...
Select this article
Method: Sequence-based physical mapping of complex genomes by whole genome profiling
- Jan van Oeveren,
- Marjo de Ruiter,
- Taco Jesse,
- Hein van der Poel,
- Jifeng Tang,
- Feyruz Yalcin,
- Antoine Janssen,
- Hanne Volpin,
- Keith E. Stormo,
- Robert Bogden,
- Michiel J.T. van Eijk,
- and Marcel Prins
Genome Res. April 2011 21: 618-625; Published in Advance February 1, 2011, doi:10.1101/gr.112094.110
...resistance gene Gpa2 in potato. Theor Appl Genet 106: 1524–1531. Borm TJA. 2008. ‘‘Construction and use of a physical map of potato.’’ PhD thesis, Wageningen University, The Netherlands. CaiW-W,ChenR, Gibbs RA, Bradley A. 2001. AClone-Array Pooled Shotgun Strategy for sequencing large s. Genome Res 11: 1619...
Select this article
RESOURCE: Bacterial Artificial Chromosome Libraries for Mouse Sequencing and Functional Analysis
- Kazutoyo Osoegawa,
- Minako Tateno,
- Peng Yeong Woon,
- Eirik Frengen,
- Aaron G. Mammoser,
- Joseph J. Catanese,
- Yoshihide Hayashizaki,
- and Pieter J. de Jong
Genome Res. January 1, 2000 10: 116-128; doi:10.1101/gr.10.1.116
...for shotgun sequencing strategies and have become the main sequence-ready clone resources for use in large-scale mapping and sequencing efforts ( Venter et al. 1996 ; Gregory et al. 1997 ; Marra et al. 1997 ). 129S6/SvEvTac and C57BL/6J female mice ( Simpson et al. 1997 ) were selected as the most useful...
Select this article
Methods: Dynamic Building of a BAC Clone Tiling Path for the Rat Genome Sequencing Project
- Rui Chen,
- Erica Sodergren,
- George M. Weinstock,
- and Richard A. Gibbs
Genome Res. April 2004 14: 679-684; doi:10.1101/gr.2171704
..., R.A., and Bradley, A. 2001 . A clone-array pooled shotgun strategy for sequencing large s. Genome Res. 11 : 1619 -1623. ↵ Engler, F.W., Hatfield, J., Nelson, W., and Soderlund, C.A. 2003 . Locating sequence on FPC maps and selecting a minimal tiling path. Genome Res. 13 : 2152 -2163. ↵ Gordon, D...
Select this article
Methods: Overlapping pools for high-throughput targeted resequencing
- Snehit Prabhu and
- Itsik Pe'er
Genome Res. July 2009 19: 1254-1261; Published in Advance May 15, 2009, doi:10.1101/gr.088559.108
...shotgun strategy for sequencing large s. Genome Res 11: 1619– 1623. CsurosM, Li B, Milosavljevic A. 2003. Clone-array pooled shotgunmapping and sequencing: Design and analysis of experiments.Genome Inform 14: 186–195. FreemanWM, Walker SJ, Vrana KE. 1999. Quantitative RT-PCR: Pitfalls and potential...
Select this article
Chicken Special/Resources: Uprobe: A genome-wide universal probe resource for comparative physical mapping in vertebrates
- Wendy A. Kellner,
- Robert T. Sullivan,
- Brian H. Carlson,
- and James W. Thomas
Genome Res. January 2005 15: 166-173; Published in Advance December 8, 2004, doi:10.1101/gr.3066805
...and minimally overlapping BAC clones for sequencing. BAC clones were full-shotgun sequenced at the National Institutes of Health (NIH) Intramural Sequencing Center and submitted to GenBank immediately after assembly. The sequence from each clone was then evaluated to determine whether or not it was orthologous...
Select this article
METHODS: Parallel Construction of Orthologous Sequence-Ready Clone Contig Maps in Multiple Species
- James W. Thomas,
- Arjun B. Prasad,
- Tyrone J. Summers,
- Shih-Queen Lee-Lin,
- Valerie V.B. Maduro,
- Jacquelyn R. Idol,
- Joseph F. Ryan,
- Pamela J. Thomas,
- Jennifer C. McDowell,
- and Eric D. Green
Genome Res. August 1, 2002 12: 1277-1285; doi:10.1101/gr.283202
...an equivalent probe in the population derived from the whole- shotgun sequence reads. These results indicate that the described approach for universal probe design and multispecies BAC mapping should be applicable to virtually the entire human using human and mouse genomic sequence data that now are readily...
Select this article
RESOURCE: BAC Resources for the Rat Genome Project
- Kazutoyo Osoegawa,
- Baoli Zhu,
- Chung Li Shu,
- Teresa Ren,
- Qing Cao,
- Gery M. Vessere,
- Michelle M. Lutz,
- Michael I. Jensen-Seaman,
- Shaying Zhao,
- and Pieter J. de Jong
Genome Res. April 2004 14: 780-785; doi:10.1101/gr.2033904
...of genomic libraries mostly as a result of their smaller vector size (about 8 kb versus about 15 kb) because of the resulting favorable effect on the economy of clone-by-clone shotgun sequencing. A further reason for the use of the BAC libraries was that the earlier rat PAC library (RPCI-31) was prepared...
Select this article
LETTER: Genomic Analysis in the sting-2 Quantitative Trait Locus for Defensive Behavior in the Honey Bee, Apis mellifera
- Neil F. Lobo,
- Lucas Q. Ton,
- Catherine A. Hill,
- Christine Emore,
- Jeanne Romero-Severson,
- Greg J. Hunt,
- and Frank H. Collins
Genome Res. December 2003 13: 2588-2593; doi:10.1101/gr.1634503
...(Supplemental data). However, we feel that the sample size is not large enough to make any definitive predictions. This genomic segment is well represented in the whole- shotgun (wgs) trace files, as well as trace files obtained by the Clone-Array Pooled Shotgun Sequencing (CAPPS; Cai et al. 2001 ) method...
Select this article
REVIEW: Automation for Genomics, Part Two: Sequencers, Microarrays, and Future Trends
- Deirdre Meldrum
Genome Res. September 1, 2000 10: 1288-1303; doi:10.1101/gr.157400
...shotgun DNA sequence data. It allows the use of entire reads independent of data quality, uses a combination of user-supplied and internally computed data quality information to improve the accuracy of assembly in the presence of repeats, and constructs contig sequence as a mosaic of the highest quality...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Cai et al. 11 (10): 1619.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: