Searching journal content for articles similar to Buske et al. 22 (7): 1372.

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  1. Method: Cancer driver topologically associated domains identify oncogenic and tumor-suppressive lncRNAs
    • Ziyan Rao,
    • Min Zhang,
    • Shaodong Huang,
    • Chenyang Wu,
    • Yuheng Zhou,
    • Weijie Zhang,
    • Xia Lin,
    • and Dongyu Zhao
    Genome Res. August 2025 35: 1842-1858; Published in Advance May 27, 2025, doi:10.1101/gr.280235.124
    ...2020; Statello et al. 2021). Triplex is a triple-helical structure in which double-stranded DNA accommodates a single-stranded RNA in the major groove (Buske et al. 2012). Many studies have shown that lncRNAs can regulate target gene expression by forming a triplex (Mondal et al. 2015; Choudhury et al...
  2. Research: Preferential formation of Z-RNA over intercalated motifs in long noncoding RNA
    • Uditi Bhatt,
    • Anne Cucchiarini,
    • Yu Luo,
    • Cameron W. Evans,
    • Jean-Louis Mergny,
    • K. Swaminathan Iyer,
    • and Nicole M. Smith
    Genome Res. February 2024 34: 217-230; Published in Advance February 14, 2024, doi:10.1101/gr.278236.123
    ...of scaffolds and functional interfaces with target molecules (Uroda et al. 2019; Simko et al. 2020). The single-stranded nature of RNA allows the formation of various secondary structures such as hairpin loops, triplexes, and double-stranded helices, including A-RNA and Z-RNA, that contribute to the stability...
  3. Method: Classification and clustering of RNA crosslink-ligation data reveal complex structures and homodimers
    • Minjie Zhang,
    • Irena T. Hwang,
    • Kongpan Li,
    • Jianhui Bai,
    • Jian-Fu Chen,
    • Tsachy Weissman,
    • James Y. Zou,
    • and Zhipeng Lu
    Genome Res. May 2022 32: 968-985; Published in Advance March 24, 2022, doi:10.1101/gr.275979.121
    ...loops, multihelix junctions, pseudoknots, and even triple helices. In the past 50 yr, in vitro studies have shed light on the exquisite folding of a number of RNAs and their complexes, such as the ribosome, RNase P, RMRP, telomerase, mascRNA, and viral IRES elements, each employing unique combinations...
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