Searching journal content for articles similar to Buccitelli et al. 27 (4): 501.

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  1. Method: Cancer driver topologically associated domains identify oncogenic and tumor-suppressive lncRNAs
    • Ziyan Rao,
    • Min Zhang,
    • Shaodong Huang,
    • Chenyang Wu,
    • Yuheng Zhou,
    • Weijie Zhang,
    • Xia Lin,
    • and Dongyu Zhao
    Genome Res. August 2025 35: 1842-1858; Published in Advance May 27, 2025, doi:10.1101/gr.280235.124
    ...to cancer driver PCGs. Utilizing these distinctive characteristics, we develop a pipeline CAncer Driver Topologically Associated Domains (CADTAD) to identify candidate cancer driver lncRNAs in pan-cancer, including 256 oncogenic lncRNAs, 177 tumor-suppressive lncRNAs, and 75 dual-function lncRNAs, as well...
  2. Method: Gene duplication is associated with gene diversification and potential neofunctionalization in lung cancer evolution
    • Paul Ashford,
    • Alexander M. Frankell,
    • Zofia Piszka,
    • Camilla S.M. Pang,
    • Mahnaz Abbasian,
    • Maise Al Bakir,
    • Mariam Jamal-Hanjani,
    • Nicholas McGranahan,
    • Charles Swanton,
    • and Christine A. Orengo
    Genome Res. March 2026 36: 561-577; Published in Advance February 19, 2026, doi:10.1101/gr.278663.123
    ...an important class of driver events in many cancer types (Zack et al. 2013; The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium 2020; Watkins et al. 2020). Tumors with WGD have more diverse patterns of aneuploidy because of the resilience provided by extra functional gene copies (Klockner...
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  3. Method: A general calculus of fitness landscapes finds genes under selection in cancers
    • Teng-Kuei Hsu,
    • Jennifer Asmussen,
    • Amanda Koire,
    • Byung-Kwon Choi,
    • Mayur A. Gadhikar,
    • Eunna Huh,
    • Chih-Hsu Lin,
    • Daniel M. Konecki,
    • Young Won Kim,
    • Curtis R. Pickering,
    • Marek Kimmel,
    • Lawrence A. Donehower,
    • Mitchell J. Frederick,
    • Jeffrey N. Myers,
    • Panagiotis Katsonis,
    • and Olivier Lichtarge
    Genome Res. May 2022 32: 916-929; Published in Advance March 17, 2022, doi:10.1101/gr.275811.121
    ...(pan-cancer), and BRD7 (skin and pan-cancer), which are unreported in other large cancer sequencing studies. Among the latter, SMARCA1 and SMARCC2 have been shown to function as tumor suppressors in gastric cancers (Takeshima et al. 2015). Transcription factors belonging to the Forkhead (i.e., FOXP1...
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  1. April 2026, 36 (4)
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