Searching journal content for articles similar to Bruggmann et al. 16 (10): 1241.

Displaying results 1-6 of 6

For checked items

view abstracts
download to citation manager

Select this article
Resource: The western redcedar genome reveals low genetic diversity in a self-compatible conifer
- Tal J. Shalev,
- Omnia Gamal El-Dien,
- Macaire M.S. Yuen,
- Shu Shengqiang,
- Shaun D. Jackman,
- René L. Warren,
- Lauren Coombe,
- Lise van der Merwe,
- Ada Stewart,
- Lori B. Boston,
- Christopher Plott,
- Jerry Jenkins,
- Guifen He,
- Juying Yan,
- Mi Yan,
- Jie Guo,
- Jesse W. Breinholt,
- Leandro G. Neves,
- Jane Grimwood,
- Loren H. Rieseberg,
- Jeremy Schmutz,
- Inanc Birol,
- Matias Kirst,
- Alvin D. Yanchuk,
- Carol Ritland,
- John H. Russell,
- and Joerg Bohlmann
Genome Res. October 2022 32: 1952-1964; Published in Advance September 15, 2022, doi:10.1101/gr.276358.121
.... (2005) identified an optimal K of two; this approach may return a K of two more often than expected when genetic structure is weak (Janes et al. 2017). The approach of Puechmaille (2016), which can help resolve K when subsampling is uneven, identified an optimal K of two as well. Analysis of fast...
OPEN ACCESS ARTICLE
Select this article
Research: Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution
- Florent Murat,
- Jian-Hong Xu,
- Eric Tannier,
- Michael Abrouk,
- Nicolas Guilhot,
- Caroline Pont,
- Joachim Messing,
- and Jérôme Salse
Genome Res. November 2010 20: 1545-1557; Published in Advance September 28, 2010, doi:10.1101/gr.109744.110
..., maize, sorghum, and Brachypodium genomes, representing three different subfamilies and different polyploidization events. By focusing on these sequence intervals, we could show that the chromosome number variation/reduction from the n = 12 common paleo-ancestor was driven by nonrandom centric double...
Select this article
Resource: The pig pangenome provides insights into the roles of coding structural variations in genetic diversity and adaptation
- Zhengcao Li,
- Xiaohong Liu,
- Chen Wang,
- Zhenyang Li,
- Bo Jiang,
- Ruifeng Zhang,
- Lu Tong,
- Youping Qu,
- Sheng He,
- Haifan Chen,
- Yafei Mao,
- Qingnan Li,
- Torsten Pook,
- Yu Wu,
- Yanjun Zan,
- Hui Zhang,
- Lu Li,
- Keying Wen,
- and Yaosheng Chen
Genome Res. October 2023 33: 1833-1847; Published in Advance November 1, 2023, doi:10.1101/gr.277638.122
...represent the populations as indicated in F.Uneven distribution of TIPs across the pig Various types of TIPs were disseminated widely but not at random throughout the pig (Fig. 4A,B). To quantify the relationship of TIP density (TIP count within nonoverlapping 2-Mb windows along the ) with two established...
OPEN ACCESS ARTICLE
Select this article
Methods: Estimating the tempo and mode of gene family evolution from comparative genomic data
- Matthew W. Hahn,
- Tijl De Bie,
- Jason E. Stajich,
- Chi Nguyen,
- and Nello Cristianini
Genome Res. August 2005 15: 1153-1160; doi:10.1101/gr.3567505
...was inferred to have changes along it, with longer branches having commensurately more changes ( Table 1 ). One concern we had prior to our analysis was that the uneven sequence coverage of these five s would affect our results; this did not appear to be the case. S. cerevisiae is, in fact, the only eukaryotic...
Select this article
Method: Paired-end sequencing of Fosmid libraries by Illumina
- Louise J.S. Williams,
- Diana G. Tabbaa,
- Na Li,
- Aaron M. Berlin,
- Terrance P. Shea,
- Iain MacCallum,
- Michael S. Lawrence,
- Yotam Drier,
- Gad Getz,
- Sarah K. Young,
- David B. Jaffe,
- Chad Nusbaum,
- and Andreas Gnirke
Genome Res. November 2012 22: 2241-2249; Published in Advance July 16, 2012, doi:10.1101/gr.138925.112
....3%) of nonredundant read pairs mapped <1 kb apart (Fig. 3A). Manual inspection suggested that a majority of these represented ‘‘nonjumps,’’ i.e., single small contiguous fragments and unequal jumpswith one of the coligated endfragments being too short to be aligned, possibly caused by uneven nick translation...
Select this article
Letter: Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?
- Zhixi Tian,
- Carene Rizzon,
- Jianchang Du,
- Liucun Zhu,
- Jeffrey L. Bennetzen,
- Scott A. Jackson,
- Brandon S. Gaut,
- and Jianxin Ma
Genome Res. December 2009 19: 2221-2230; Published in Advance September 29, 2009, doi:10.1101/gr.083899.108
....108. 19:2221–2230 2009 by Cold Spring Harbor Laboratory Press; ISSN 1088-9051/09; www..org Genome Research 2221 www..org identified LTR-RTs and analyzed their structural variation along the 12 rice chromosomes. We then investigated the relationships between GR rates and local genomic features, including...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Bruggmann et al. 16 (10): 1241.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: