Searching journal content for articles similar to Brashear et al. 31 (8): 1353.

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Research: The grasshopper genome reveals long-term gene content conservation of the X Chromosome and temporal variation in X Chromosome evolution
- Xinghua Li,
- Judith E. Mank,
- and Liping Ban
Genome Res. July 2024 34: 997-1007; Published in Advance August 5, 2024, doi:10.1101/gr.278794.123
..., Murphy WJ. 2021. Genomic architecture constrained placental mammal X chromosome evolution. Genome Res 31: 1353–1365. doi:10.1101/gr.275274.121 ↵Browning SR, Browning BL. 2007. Rapid and accurate haplotype phasing and missing-data inference for whole- association studies by use of localized haplotype...
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Mini-Review: Evolution of genome-wide methylation profiling technologies
- Carolina Montano and
- Winston Timp
Genome Res. April 2025 35: 572-582; doi:10.1101/gr.278407.123
....Cytosine methylation plays a critical role in genomic imprinting, gene regulation, X-Chromosome inactivation (XCI), cellular differentiation, aging, and tumorigenesis. Cells have an extensive system of proteins that establish these methylation patterns through de novo methylation or demethylation, copy methylation...
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Mini-Review: Large-scale genomic analysis of the domestic dog informs biological discovery
- Reuben M. Buckley and
- Elaine A. Ostrander
Genome Res. June 2024 34: 811-821; Published in Advance July 2, 2024, doi:10.1101/gr.278569.123
...is particularly well characterized compared with other domestic mammals, with almost 3000 high-coverage s publicly available. Importantly, as the number of sequenced s increases, new avenues for analysis are becoming available. Herein, we discuss recent discoveries in canine genomics regarding behavior...
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Research: GC-biased gene conversion drives accelerated evolution of ultraconserved elements in mammalian and avian genomes
- Anguo Liu,
- Nini Wang,
- Guoxiang Xie,
- Yang Li,
- Xixi Yan,
- Xinmei Li,
- Zhenliang Zhu,
- Zhuohui Li,
- Jing Yang,
- Fanxin Meng,
- Mingle Dou,
- Weihuang Chen,
- Nange Ma,
- Yu Jiang,
- Yuanpeng Gao,
- and Yu Wang
Genome Res. October 2023 33: 1673-1689; Published in Advance October 26, 2023, doi:10.1101/gr.277784.123
...of functional alterations. Next, we focused on more ancient gBGC events that may have directly affected eutherian evolution.Using the same identification pipeline of gBGC, we compared mUCEs and aUCEs in reconstructed ancestral s of placental mammals and birds to infer ancient eutherian innovation of g...
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Resource: Genetic features and genomic targets of human KRAB-zinc finger proteins
- Jonas de Tribolet-Hardy,
- Christian W. Thorball,
- Romain Forey,
- Evarist Planet,
- Julien Duc,
- Alexandre Coudray,
- Bara Khubieh,
- Sandra Offner,
- Cyril Pulver,
- Jacques Fellay,
- Michael Imbeault,
- Priscilla Turelli,
- and Didier Trono
Genome Res. August 2023 33: 1409-1423; Published in Advance September 20, 2023, doi:10.1101/gr.277722.123
..., and ZNF117) near the centromere (Fig. 1A; Supplemental Fig. S1).View larger version: In this window In a new window Figure 1. Human KRAB-zinc finger proteins (KZFPs) and their evolution in the primate lineage. (A) Dots indicate relative chromosomal position of KZFP genes (defined by juxtaposed KRAB...
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Resource: Genome biology of the darkedged splitfin, Girardinichthys multiradiatus, and the evolution of sex chromosomes and placentation
- Kang Du,
- Martin Pippel,
- Susanne Kneitz,
- Romain Feron,
- Irene da Cruz,
- Sylke Winkler,
- Brigitta Wilde,
- Edgar G. Avila Luna,
- Gene Myers,
- Yann Guiguen,
- Constantino Macias Garcia,
- and Manfred Schartl
Genome Res. March 2022 32: 583-594; Published in Advance January 26, 2022, doi:10.1101/gr.275826.121
.... This is consistent with the idea that regulatory evolution is crucial to major evolutionary innovation (Carroll 2008; Emerson and Li 2010). We have generated genomic tools for G. multiradiatus as a representative of the live-bearing placental goodeids and could identify molecular changes that are connected...
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LETTER: Using genomic data to unravel the root of the placental mammal phylogeny
- William J. Murphy,
- Thomas H. Pringle,
- Tess A. Crider,
- Mark S. Springer,
- and Webb Miller
Genome Res. April 2007 17: 413-421; Published in Advance February 23, 2007, doi:10.1101/gr.5918807
...Using genomic data to unravel the root of the placental mammal phylogeny William J. Murphy 1 , 5 , Thomas H. Pringle 2 , Tess A. Crider 1 , Mark S. Springer 3 , and Webb Miller 4 1 Department of Veterinary Integrative...
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PERSPECTIVE: The opossum genome: Insights and opportunities from an alternative mammal
- Paul B. Samollow
Genome Res. August 2008 18: 1199-1215; doi:10.1101/gr.065326.107
...The opossum genome: Insights and opportunities from an alternative mammal Paul B. Samollow 1 Department of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences,Texas A&amp;M University, College Station, Texas 77843-4458, USA...
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Perspective: Comparative genomics as a tool to understand evolution and disease
- Jessica Alföldi and
- Kerstin Lindblad-Toh
Genome Res. July 2013 23: 1063-1068; doi:10.1101/gr.157503.113
...of regulation for determining body plan and neurological development. Detecting the features and functions in the human To more fully elucidate the constrained elements in the human , 29 placental mammals were sequenced. This number was chosen to gain enough power to find constrained elements >12 bp...
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Review: Origins, evolution, and phenotypic impact of new genes
- Henrik Kaessmann
Genome Res. October 2010 20: 1313-1326; Published in Advance July 22, 2010, doi:10.1101/gr.101386.109
...onset of mammalian meiotic sex chromosome silencing through assessments of the age of X-derived retrogenes. This work revealed that not only the mechanisms of meiotic sex chromosome silencing but also the sex chromosomes themselves originated in the common ancestor of placental mammals andmarsupials (i...

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