Searching journal content for articles similar to Bourque et al. 14 (4): 507.

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  1. Research: MHC in newts illuminates the evolutionary dynamics of complex regions in giant genomes
    • Wiesław Babik,
    • Katarzyna Dudek,
    • Gemma Palomar,
    • Marzena Marszałek,
    • Grzegorz Dubin,
    • Maximina H. Yun,
    • and Magdalena Migalska
    Genome Res. February 2026 36: 303-317; Published in Advance January 12, 2026, doi:10.1101/gr.281127.125
    ...the formation of unfit MHC-I–APG recombinants. This theory, based on research in chicken and rat, assumes a single dominantly expressed MHC-I gene that coevolves with APGs (Kaufman 1999, 2015). Such a state has been suggested as ancestral for jawed vertebrates, with a “lucky” accident of a genomic rearrangement...
  2. Research: Genomic architecture constrained placental mammal X Chromosome evolution
    • Wesley A. Brashear,
    • Kevin R. Bredemeyer,
    • and William J. Murphy
    Genome Res. August 2021 31: 1353-1365; Published in Advance July 22, 2021, doi:10.1101/gr.275274.121
    ..., as some placental mammals exhibit X Chromosome rearrangements relative to the placental mammal ancestor, although these are generally more rare and phylogenetically restricted (e.g., mouse, rat) (Amar et al. 1988; Piumi et al. 1998; Robinson et al. 1998; Sandstedt and Tucker 2004; Park et al. 2013...
  3. LETTER: Reconstructing large regions of an ancestral mammalian genome in silico
    • Mathieu Blanchette,
    • Eric D. Green,
    • Webb Miller,
    • and David Haussler
    Genome Res. December 2004 14: 2412-2423; doi:10.1101/gr.2800104
    ...-specific traits. Following completion of the human sequence, there is now considerable interest in obtaining a more comprehensive understanding of its evolution ( International Human Genome Sequencing Consortium [IHGSC] 2001 ; International Mouse Genome Sequencing Consortium [IMGSC] 2002 ; Rat Genome Sequencing...
  4. Resource: Breakpoint graphs and ancestral genome reconstructions
    • Max A. Alekseyev and
    • Pavel A. Pevzner
    Genome Res. May 2009 19: 943-957; Published in Advance February 13, 2009, doi:10.1101/gr.082784.108
    ..., macaque, mouse, rat, dog, and opossum. MGRA relies on the notion of the multiple breakpoint graphs to overcome some limitations of the existing approaches to ancestral genome reconstructions. MGRA also generates the rearrangement-based characters guiding the phylogenetic tree reconstruction when...
  5. Forum: Are molecular cytogenetics and bioinformatics suggesting diverging models of ancestral mammalian genomes?
    • Lutz Froenicke,
    • Montserrat Garcia Caldés,
    • Alexander Graphodatsky,
    • Stefan Müller,
    • Leslie A. Lyons,
    • Terence J. Robinson,
    • Marianne Volleth,
    • Fengtang Yang,
    • and Johannes Wienberg
    Genome Res. March 2006 16: 306-310; doi:10.1101/gr.3955206
    ...–36. ↵ Bourque, G., Pevzner, P.A., and Tesler, G. 2004 . Reconstructing the genomic architecture of ancestral mammals: Lessons from human, mouse, and rat s. Genome Res. 14 : 507 –516. ↵ Bourque, G., Zdobnov, E.M., Bork, P., Pevzner, P.A., and Tesler, G. 2005 . Comparative architectures of mammalian...
  6. ARTICLE: Comparative Recombination Rates in the Rat, Mouse, and Human Genomes
    • Michael I. Jensen-Seaman,
    • Terrence S. Furey,
    • Bret A. Payseur,
    • Yontao Lu,
    • Krishna M. Roskin,
    • Chin-Fu Chen,
    • Michael A. Thomas,
    • David Haussler,
    • and Howard J. Jacob
    Genome Res. April 2004 14: 528-538; doi:10.1101/gr.1970304
    ...yielded very similar results, with a slight increase in R2 values. We asked whether there was a correlation between recombination rates in these mammals and the neutral mutation rate determined by the rate of substitution in ancestral repeats along each branch in the human–mouse–rat (HMR) phylogenetic...
  7. Letter: A novel active endogenous retrovirus family contributes to genome variability in rat inbred strains
    • Yongming Wang,
    • František Liška,
    • Claudia Gosele,
    • Lucie Šedová,
    • Vladimír Křen,
    • Drahomíra Křenová,
    • Zoltán Ivics,
    • Norbert Hubner,
    • and Zsuzsanna Izsvák
    Genome Res. January 2010 20: 19-27; Published in Advance November 3, 2009, doi:10.1101/gr.100073.109
    ...A novel active endogenous retrovirus family contributes to genome variability in rat inbred strains Yongming Wang 1 , 4 , František Liška 1 , 2 , 4 , Claudia Gosele 1 , Lucie Šedová 2 , Vladimír Křen 2 , Drahomíra Křenová 2...
  8. Chicken Special/Letters: Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages
    • Guillaume Bourque,
    • Evgeny M. Zdobnov,
    • Peer Bork,
    • Pavel A. Pevzner,
    • and Glenn Tesler
    Genome Res. January 2005 15: 98-110; Published in Advance December 8, 2004, doi:10.1101/gr.3002305
    ...those considered. 6 These numbers, normalized using the MA -human edge, are displayed in Table 2 . View larger version: In this window In a new window Figure 2. Ancestral murid rodent ancestor ( RA ), ancestral mammalian ancestor ( MA ), and evolutionary tree recovered by MGR using the human, mouse, rat...
  9. Forum: The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction
    • Guillaume Bourque,
    • Glenn Tesler,
    • and Pavel A. Pevzner
    Genome Res. March 2006 16: 311-313; doi:10.1101/gr.4631806
    ...References ↵ Bourque, G. and Pevzner, P.A. 2002 . Genome-scale evolution: Reconstructing gene orders in the ancestral species. Genome Res. 12 : 26 –36. ↵ Bourque, G., Pevzner, P.A., and Tesler, G. 2004 . Reconstructing the genomic architecture of ancestral mammals: Lessons from human, mouse, and rat s...
  10. LETTER: Human, Mouse, and Rat Genome Large-Scale Rearrangements: Stability Versus Speciation
    • Shaying Zhao,
    • Jyoti Shetty,
    • Lihua Hou,
    • Arthur Delcher,
    • Baoli Zhu,
    • Kazutoyo Osoegawa,
    • Pieter de Jong,
    • William C. Nierman,
    • Robert L. Strausberg,
    • and Claire M. Fraser
    Genome Res. October 2004 14: 1851-1860; Published in Advance September 13, 2004, doi:10.1101/gr.2663304
    ....A., and Tesler, G. 2004 . Reconstructing the genomic architecture of ancestral mammals: Lessons from human, mouse, and rat s. Genome Res. 14 : 507 -516. ↵ Britton-Davidian, J., Catalan, J., da Graca Ramalhinho, M., Ganem, G., Auffray, J.C., Capela, R., Biscoito, M., Searle, J.B., and da Luz Mathias, M. 2000...
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