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LETTER: Integrated YAC Contig Map of the Prader–Willi/Angelman Region on Chromosome 15q11–q13 with Average STS Spacing of 35 kb
- Susan L. Christian,
- Nehal K. Bhatt,
- Scott A. Martin,
- James S. Sutcliffe,
- Takeo Kubota,
- Bing Huang,
- Apiwat Mutirangura,
- A. Craig Chinault,
- Arthur L. Beaudet,
- and David H. Ledbetter
Genome Res. February 1, 1998 8: 146-157; doi:10.1101/gr.8.2.146
...Integrated YAC Contig Map of the Prader–Willi/Angelman Region on Chromosome 15q11–q13 with Average STS Spacing of 35 kb Susan L. Christian 1 , Nehal K. Bhatt 1 , Scott A. Martin 1 , James S. Sutcliffe 2 , Takeo Kubota 3 , Bing Huang...
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RESOURCE: Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome
- Martin Krzywinski,
- John Wallis,
- Claudia Gösele,
- Ian Bosdet,
- Readman Chiu,
- Tina Graves,
- Oliver Hummel,
- Dan Layman,
- Carrie Mathewson,
- Natasja Wye,
- Baoli Zhu,
- Derek Albracht,
- Jennifer Asano,
- Sarah Barber,
- Mabel Brown-John,
- Susanna Chan,
- Steve Chand,
- Alison Cloutier,
- Jonathon Davito,
- Chris Fjell,
- Tony Gaige,
- Detlev Ganten,
- Noreen Girn,
- Kurtis Guggenheimer,
- Heinz Himmelbauer,
- Thomas Kreitler,
- Stephen Leach,
- Darlene Lee,
- Hans Lehrach,
- Michael Mayo,
- Kelly Mead,
- Teika Olson,
- Pawan Pandoh,
- Anna-Liisa Prabhu,
- Heesun Shin,
- Simone Tänzer,
- Jason Thompson,
- Miranda Tsai,
- Jason Walker,
- George Yang,
- Mandeep Sekhon,
- LaDeana Hillier,
- Heike Zimdahl,
- Andre Marziali,
- Kazutoyo Osoegawa,
- Shaying Zhao,
- Asim Siddiqui,
- Pieter J. de Jong,
- Wes Warren,
- Elaine Mardis,
- John D. McPherson,
- Richard Wilson,
- Norbert Hübner,
- Steven Jones,
- Marco Marra,
- and Jacqueline Schein
Genome Res. April 2004 14: 766-779; doi:10.1101/gr.2336604
...via fingerprinted BAC and P1 artificial chromosome clones (PACs) sharing interspersed repetitive sequence markers with the YAC-based physical map. We have annotated 95% of the fingerprint map clones in contigs with coordinates on the version 3.1 rat sequence assembly, using BAC-end sequences...
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RESOURCE: Construction of a BAC Contig Map of Chromosome 16q by Two-Dimensional Overgo Hybridization
- Cliff S. Han,
- Robert D. Sutherland,
- Phillip B. Jewett,
- Mary L. Campbell,
- Linda J. Meincke,
- Judy G. Tesmer,
- Mark O. Mundt,
- John J. Fawcett,
- Ung-Jin Kim,
- Larry L. Deaven,
- and Norman A. Doggett
Genome Res. May 1, 2000 10: 714-721; doi:10.1101/gr.10.5.714
...Construction and Validation Overgo-content BAC contigs were constructed according to the hybridization results, using the LANL STS–YAC-derived overgos as the framework for ordering. The overgos from other groups were integrated into the map according to the common BACs hybridized. Finally, 53 contigs were...
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LETTER: An Integrated Physical Map for the Short Arm of Human Chromosome 5
- Ellen T. Peterson,
- Robert Sutherland,
- Donna L. Robinson,
- Leslie Chasteen,
- Meryl Gersh,
- Joan Overhauser,
- Larry L. Deaven,
- Robert K. Moyzis,
- and Deborah L. Grady
Genome Res. December 1, 1999 9: 1250-1267; doi:10.1101/gr.9.12.1250
....W. , Mohr-Tidwell R.M. , Peluso D.C. , Fulton R.S. , et al. ( 1997 ) A physical map of human chromosome 7: An integrated YAC contig map with average STS spacing 79 kb. Genome Res. 7 : 673 – 692 . Centre d'Etude du Polymorphisme Humain (CEPH)-Genethon: http://www.cephb.fr/ceph-genethon-map.html . ↵ Chumakov...
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LETTER: A 12-Mb Complete Coverage BAC Contig Map in Human Chromosome 16p13.1–p11.2
- Yicheng Cao,
- Hyung Lyun Kang,
- Xuequn Xu,
- Mei Wang,
- So Hee Dho,
- Jun Ryul Huh,
- Byeong-Jae Lee,
- Francis Kalush,
- Diana Bocskai,
- Yan Ding,
- Judith G. Tesmer,
- Jonghyeob Lee,
- Eunpyo Moon,
- Vesna Jurecic,
- Antonio Baldini,
- Heinz-Ulrich Weier,
- Norman A. Doggett,
- Melvin I. Simon,
- Mark D. Adams,
- and Ung-Jin Kim
Genome Res. August 1, 1999 9: 763-774; doi:10.1101/gr.9.8.763
...mapped via previous YAC–STS mapping. Mapped STSs are invaluable for accessing the libraries in the beginning. However, the resolution and density of the markers in currently available physical maps are not sufficient for the development of full coverage contig maps. Incremental time-consuming processes...
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RESEARCH: An STS-Based Radiation Hybrid Map of the Human Genome
- Elizabeth A. Stewart,
- Kathleen B. McKusick,
- Amita Aggarwal,
- Ewa Bajorek,
- Shannon Brady,
- Angela Chu,
- Nicole Fang,
- David Hadley,
- Mark Harris,
- Sami Hussain,
- Richard Lee,
- Annu Maratukulam,
- Kyle O’Connor,
- Shanti Perkins,
- Mark Piercy,
- Fawn Qin,
- Tim Reif,
- Carla Sanders,
- Xiaohong She,
- Wei-Lin Sun,
- Poroshat Tabar,
- Susan Voyticky,
- Sid Cowles,
- Jian-Bing Fan,
- Chris Mader,
- John Quackenbush,
- Richard M. Myers,
- and David R. Cox
Genome Res. May 1, 1997 7: 422-433; doi:10.1101/gr.7.5.422
...) Characterization of NIGMS human/rodent somatic hybrid mapping panel 2 by PCR. Genomics 16 : 315 – 319 . ↵ Gemmill R.M. , Chumakov I. , Scott P. , Waggoner B. , Rigault P. , Cypser J. , Chen Q. , Weissenbach J. , Gardiner K. , Wang H. , et al. ( 1995 ) A second-generation YAC contig map of human chromosome 3...
ARTICLE: Refined localization of the cerebral cavernous malformation gene (CCM1) to a 4-cM interval of chromosome 7q contained in a well-defined YAC contig.
- E W Johnson,
- L M Iyer,
- S S Rich,
- H T Orr,
- A Gil-Nagel,
- J H Kurth,
- J M Zabramski,
- D A Marchuk,
- J Weissenbach,
- and C L Clericuzio
Genome Res. November 1995 5: 368-380; doi:10.1101/gr.5.4.368
...contig containing the CCM1 critical region. The YAC-based STS content map of the CCM1 critical region of chromosome 7 is depicted, as deduced by SEGMAP/version 3.36 (Green and Green 1991; C.L. Magness and P. Green, unpubl.). The 34 STSs (see Table 1) mapped to the YAC clones are listed along the top...
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LETTER: A High-Resolution HAPPY Map of Dictyostelium discoideum Chromosome 6
- Bernard A. Konfortov,
- Helen M. Cohen,
- Alan T. Bankier,
- and Paul H. Dear
Genome Res. November 1, 2000 10: 1737-1742; doi:10.1101/gr.141700
...of Dictyostelium discoideum consisting of 300 sequence-tagged sites with an average spacing of 14 kb along the ∼4-Mb chromosome. The majority of the marker sequences were derived from randomly chosen clones from four different chromosome 6–enriched plasmid libraries or from subclones of YACs previously mapped...
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LETTER: A Sequence-Ready BAC Clone Contig of a 2.2-Mb Segment of Human Chromosome 1q24
- Douglas Vollrath and
- Virna L. Jaramillo-Babb
Genome Res. February 1, 1999 9: 150-157; doi:10.1101/gr.9.2.150
...with a restriction map of the region based on digestion of YAC clones ( Belmouden et al. 1997 ). In summary, two rounds of end STS generation and one walking step were required to achieve closure and a single contig of 78 clones. To integrate our map with previously published physical and genetic maps of the region...
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ARTICLE: A high-fidelity physical map of human chromosome 21q in yeast artificial chromosomes.
- J R Korenberg,
- X N Chen,
- S Mitchell,
- S Fannin,
- S Gerwehr,
- D Cohen,
- and I Chumakov
Genome Res. December 1995 5: 427-443; doi:10.1101/gr.5.5.427
...and overlapping YACs was reported by Nizetic et al. (1994), who also developed a cosmid pocket map for 145 in- tervals of chromosome 21 integrated with the YAC map. The development of sequence-ready contigs for any chromosome r quires ahighly ac- curate physical map. Therefore, the physical maps developed...

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