Searching journal content for articles similar to Bouffard et al. 7 (1): 59.

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  1. Resource: Epigenomics of embryogenesis in turbot
    • Oscar Aramburu,
    • Belen G Pardo,
    • Ada Jimenez-Gonzalez,
    • Andrés Blanco-Hortas,
    • Daniel Macqueen,
    • Carmen Bouza,
    • and Paulino Martinez
    Genome Res. November 4, 2025 gr.280355.124; Published in Advance November 4, 2025, doi:10.1101/gr.280355.124
    ...-state model was chosen as it maximized the 258 number of non-redundant biologically relevant states. This model represented 259 four active promoter states proximal to the transcription start site (TSS), 260 comprising two strictly active promoter states (STssA and TssA), one bivalent 261 signal after...
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  2. LETTER: Segmental Duplications Flank the Multiple Sclerosis Locus on Chromosome 17q
    • Daniel C. Chen,
    • Janna Saarela,
    • Royden A. Clark,
    • Timo Miettinen,
    • Anthony Chi,
    • Evan E. Eichler,
    • Leena Peltonen,
    • and Aarno Palotie
    Genome Res. August 2004 14: 1483-1492; Published in Advance July 15, 2004, doi:10.1101/gr.2340804
    ...at Chromosome 17q22–24, the accession numbers of all the BACs between the two anchors were recorded separately from the public UCSC HGP ( http://.ucsc.edu ) and Celera ( http://www.celera.com ) bases, and the BACs were ordered according to their 5′ position on a spreadsheet. STSs (sequence tagged sites) were...
  3. RESOURCE: Construction of a BAC Contig Map of Chromosome 16q by Two-Dimensional Overgo Hybridization
    • Cliff S. Han,
    • Robert D. Sutherland,
    • Phillip B. Jewett,
    • Mary L. Campbell,
    • Linda J. Meincke,
    • Judy G. Tesmer,
    • Mark O. Mundt,
    • John J. Fawcett,
    • Ung-Jin Kim,
    • Larry L. Deaven,
    • and Norman A. Doggett
    Genome Res. May 1, 2000 10: 714-721; doi:10.1101/gr.10.5.714
    ...of this chromosome. The integrated physical map was generated previously in our laboratory and contains 1150 STSs, providing a marker on average every 78 kb on the euchromatic arms of chromosome 16. The other two maps used for this effort were the radiation hybrid maps of chromosome 16 from Whitehead Institute...
  4. RESOURCE: Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21
    • Robert Lyle,
    • Paola Prandini,
    • Kazutoyo Osoegawa,
    • Boudewijn ten Hallers,
    • Sean Humphray,
    • Baoli Zhu,
    • Eduardo Eyras,
    • Robert Castelo,
    • Christine P. Bird,
    • Sarantos Gagos,
    • Carol Scott,
    • Antony Cox,
    • Samuel Deutsch,
    • Catherine Ucla,
    • Marc Cruts,
    • Sophie Dahoun,
    • Xinwei She,
    • Frederique Bena,
    • Sheng-Yue Wang,
    • Christine Van Broeckhoven,
    • Evan E. Eichler,
    • Roderic Guigo,
    • Jane Rogers,
    • Pieter J. de Jong,
    • Alexandre Reymond,
    • and Stylianos E. Antonarakis
    Genome Res. November 2007 17: 1690-1696; Published in Advance September 25, 2007, doi:10.1101/gr.6675307
    ...Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21 Robert Lyle 1 , 10 , 11 , 13 , Paola Prandini 1 , 10 , Kazutoyo Osoegawa 2 , Boudewijn ten Hallers 2 , Sean Humphray 3...
  5. LETTER: Computational Comparison of Human Genomic Sequence Assemblies for a Region of Chromosome 4
    • Colin A.M. Semple,
    • Stewart W. Morris,
    • David J. Porteous,
    • and Kathryn L. Evans
    Genome Res. March 1, 2002 12: 424-429; Published in Advance February 15, 2002, doi:10.1101/gr.207902
    ...Computational Comparison of Human Genomic Sequence Assemblies for a Region of Chromosome 4 Colin A.M. Semple 1 , 2 , Stewart W. Morris , David J. Porteous , and Kathryn L. Evans Medical Genetics Section, Department of Medical Sciences...
  6. LETTER: High-Resolution Transcript Map of the Region Spanning D12S1629 and D12S312 at Chromosome 12q13: Triple A Syndrome-Linked Region
    • Hyoungnam Lee,
    • Eunkyung Choi,
    • Young Seomun,
    • K. Montgomery,
    • A. Huebner,
    • Eunice Lee,
    • Stephanie Lau,
    • Choun-Ki Joo,
    • R. Kucherlapati,
    • and Sung-Joo Kim Yoon
    Genome Res. October 1, 2000 10: 1561-1567; doi:10.1101/gr.142100
    ...constructed a high-resolution transcript map with PAC/BAC/cosmid clones. The strategy for the construction of such a map involved utilization of STSs for the screening of the large insert bacterial chromosome libraries and a chromosome 12-specific cosmid library by hybridization. The contig was constructed...
  7. METHODS: High-Resolution BAC-Based Map of the Central Portion of Mouse Chromosome 5
    • Jonathan Crabtree,
    • Tim Wiltshire,
    • Brian Brunk,
    • Shaying Zhao,
    • Jonathan Schug,
    • Christian J. Stoeckert, Jr.,
    • and Maja Bucan
    Genome Res. October 1, 2001 11: 1746-1757; doi:10.1101/gr.195101
    ...on mouse Chromosome 5 (oriented with centromeric end leftward and telomeric end rightward ). The orthologous regions in the human are indicated on the top (blue and open boxes). The relative positions of mapped STSs and ESTs are indicated on the top of the map, including the corresponding loci names (e...
  8. REPORT: Comparative Genome Mapping in the Sequence-based Era: Early Experience with Human Chromosome 7
    • James W. Thomas,
    • Tyrone J. Summers,
    • Shih-Queen Lee-Lin,
    • Valerie V. Braden Maduro,
    • Jacquelyn R. Idol,
    • Stephen D. Mastrian,
    • Joseph F. Ryan,
    • D. Curtis Jamison,
    • and Eric D. Green
    Genome Res. May 1, 2000 10: 624-633; doi:10.1101/gr.10.5.624
    ...of orthologs of mapped mouse genes. Such orthologs can then be precisely positioned relative to mapped human STSs and other genes. The chromosome 7 sequence generated to date has allowed us to more than double the number of genes that can be placed on the comparative map. The latter effort reveals that human...
  9. LETTER: A Sequence-Ready BAC Clone Contig of a 2.2-Mb Segment of Human Chromosome 1q24
    • Douglas Vollrath and
    • Virna L. Jaramillo-Babb
    Genome Res. February 1, 1999 9: 150-157; doi:10.1101/gr.9.2.150
    .... A YAC/STS content map of the region was constructed (D. Vollrath, unpubl.), and 19 roughly ordered STSs (an average of ∼1 STS per 100 kb) were screened against a fivefold redundant, commercially available BAC library (see Methods). A collection of 59 clones was obtained, grouped into 9 contigs...
  10. RESEARCH: Clone–Contig and STS Maps of the Hereditary Hemochromatosis Region on Human Chromosome 6p21.3–p22
    • Peter Lauer,
    • Nicole C. Meyer,
    • Cynthia E. Prass,
    • Steven M. Starnes,
    • Roger K. Wolff,
    • and Andreas Gnirke
    Genome Res. May 1, 1997 7: 457-470; doi:10.1101/gr.7.5.457
    .... Approximately 3 Mb of DNA was covered by a bacterial clone contig that consists of 38 BACs, 45 PACs, 26 P1 clones and one λ phage. The bacterial clone-based STS map comprises 153 STSs. A contiguous block of 8 STSs could be amplified from both human chromosome 6 and 5. Further characterization of selected STSs...
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