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Method: Nematode gene annotation by machine-learning-assisted proteotranscriptomics enables proteome-wide evolutionary analysis
- Alejandro Ceron-Noriega,
- Miguel V. Almeida,
- Michal Levin,
- and Falk Butter
Genome Res. January 2023 33: 112-128; Published in Advance January 18, 2023, doi:10.1101/gr.277070.122
...genes in the model organism Caenorhabditis elegans. Extensive phylogenetic systems analysis using this comprehensive proteome annotation provides new insights into evolutionary processes of this metazoan group.Nematodes are one of the most diverse, abundant, and widespread metazoan phylum on earth...
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Research: Deep taxon sampling reveals the evolutionary dynamics of novel gene families in Pristionchus nematodes
- Neel Prabh,
- Waltraud Roeseler,
- Hanh Witte,
- Gabi Eberhardt,
- Ralf J. Sommer,
- and Christian Rödelsperger
Genome Res. November 2018 28: 1664-1674; Published in Advance September 19, 2018, doi:10.1101/gr.234971.118
..., Henkel CV, Jansen HJ, Butler D, Pirovano W. 2011. Scaffolding pre-assembled contigs using SSPACE. Bioinformatics 27: 578–579. ↵Borchert N, Dieterich C, Krug K, Schütz W, Jung S, Nordheim A, Sommer RJ, Macek B. 2010. Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode...
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