Searching journal content for articles similar to Bokelmann et al. 30 (10): 1449.

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  1. Method: True single-molecule DNA sequencing of a pleistocene horse bone
    • Ludovic Orlando,
    • Aurelien Ginolhac,
    • Maanasa Raghavan,
    • Julia Vilstrup,
    • Morten Rasmussen,
    • Kim Magnussen,
    • Kathleen E. Steinmann,
    • Philipp Kapranov,
    • John F. Thompson,
    • Grant Zazula,
    • Duane Froese,
    • Ida Moltke,
    • Beth Shapiro,
    • Michael Hofreiter,
    • Khaled A.S. Al-Rasheid,
    • M. Thomas P. Gilbert,
    • and Eske Willerslev
    Genome Res. October 2011 21: 1705-1719; Published in Advance July 29, 2011, doi:10.1101/gr.122747.111
    ...and could provide the first massive, direct, and unbiased access to every single molecule preserved in fossils, potentially characterizing the full range of DNA damage through the analysis of nucleotide misincorporation and fragmentation patterns (Stiller et al. 2006; Briggs et al. 2007; Brotherton et al...
  2. Methods: Direct multiplex sequencing (DMPS)—a novel method for targeted high-throughput sequencing of ancient and highly degraded DNA
    • Mathias Stiller,
    • Michael Knapp,
    • Udo Stenzel,
    • Michael Hofreiter,
    • and Matthias Meyer
    Genome Res. October 2009 19: 1843-1848; Published in Advance July 27, 2009, doi:10.1101/gr.095760.109
    .... Patterns of damage in genomic DNA sequences from a Neandertal. Proc Natl Acad Sci 104: 14616–14621. Brotherton P, Endicott P, Sanchez JJ, Beaumont M, Barnett R, Austin J, Cooper A. 2007. Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause...
  3. Method: Simultaneous assessment of human genome and methylome data in a single experiment using limited deamination of methylated cytosine
    • Bo Yan,
    • Duan Wang,
    • and Laurence Ettwiller
    Genome Res. June 2024 34: 904-913; Published in Advance June 10, 2024, doi:10.1101/gr.278294.123
    ...double-stranded DNA together.Chemical or fortuitous deamination can also be used as means to identify cytosine methylation. For example, Gokhman et al. (2014) elegantly harness DNA damage resulting from the natural degradation processes of inappropriately stored DNA to identify methylated...
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  4. Method: Transcriptional fates of human-specific segmental duplications in brain
    • Max L. Dougherty,
    • Jason G. Underwood,
    • Bradley J. Nelson,
    • Elizabeth Tseng,
    • Katherine M. Munson,
    • Osnat Penn,
    • Tomasz J. Nowakowski,
    • Alex A. Pollen,
    • and Evan E. Eichler
    Genome Res. October 2018 28: 1566-1576; Published in Advance September 18, 2018, doi:10.1101/gr.237610.118
    ...distinguish between nearly identical genes/paralogs. We used biotinylated probes to enrich for full-length cDNA from duplicated regions, which were then amplified, size-fractionated, and sequenced using single-molecule, long-read sequencing technology, permitting us to distinguish between highly identical...
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