Searching journal content for articles similar to Blow et al. 18 (8): 1347.

Displaying results 1-10 of 734

For checked items

view abstracts
download to citation manager

Select this article
Research: Genomic regulatory landscape underlying the antiviral response of Atlantic salmon
- Shahmir Naseer,
- Thomas C Clark,
- Bertrand Collet,
- Pooran Dewari,
- Damir Baranasic,
- Daniel J Macqueen,
- Pierre Boudinot,
- and Samuel A.M. Martin
Genome Res. October 22, 2025 gr.280579.125; Published in Advance October 22, 2025, doi:10.1101/gr.280579.125
...et al., 2008, 2010), the regulatory basis of the IFN 89 system, and more generally antiviral transcriptional responses, remains poorly understood. 90 To tackle this knowledge gap, we investigated the genomic regulatory mechanisms driving 91 core ISG expression responses in the head kidney of Atlantic...
- Abstract
- Full Text (PDF)
OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
Select this article
Research: Birth of protein-coding exons by ancient domestication of LINE-1 retrotransposon
- Koichi Kitao,
- Kenji Ichiyanagi,
- and So Nakagawa
Genome Res. June 2025 35: 1287-1300; Published in Advance May 8, 2025, doi:10.1101/gr.280007.124
...of host s (Sotero-Caio et al. 2017). In humans, transposon-derived sequences are estimated to account for >60% of the genomic sequence (de Koning et al. 2011). Occasionally, transposon-encoded proteins have been “domesticated” as novel host proteins (Volff 2006).Transposons are typically classified...
Select this article
Research: Pangenome analysis reveals families of ubiquitin-ligase adaptors as key genomic divergence drivers that lead to hybrid incompatibility
- Dongying Xie,
- Pohao Ye,
- Yiming Ma,
- and Zhongying Zhao
Genome Res. March 2026 36: 506-521; Published in Advance February 17, 2026, doi:10.1101/gr.280885.125
...and Continuing Education, Hong Kong Baptist University, Shenzhen 518057, China ↵3 These authors contributed equally to this work. Corresponding author: zyzhao@hkbu.edu.hkAbstractUnderstanding how genomic divergence drives biodiversity remains a central question in evolutionary biology. The nematodes...
Select this article
Research: Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
- Liangxi Wang,
- Tiegh Taylor,
- Kumaragurubaran Rathnakumar,
- Nadiya Khyzha,
- Minggao Liang,
- Azad Alizada,
- Laura F. Campitelli,
- Sara E. Pour,
- Zain M. Patel,
- Lina Antounians,
- Ian C. Tobias,
- Huayun Hou,
- Timothy R. Hughes,
- Sushmita Roy,
- Jennifer A. Mitchell,
- Jason E. Fish,
- and Michael D. Wilson
Genome Res. July 2025 35: 1544-1559; Published in Advance June 6, 2025, doi:10.1101/gr.280357.124
...networks remains to be seen.Previous work cloning and sequencing DNA from RELA ChIP led to the conclusion that ∼11% of NF-kB-bound regions contain an Alu-derived NF-kB motif (Antonaki et al. 2011). However, the extent to which specific subfamilies of repetitive elements contribute to NF-kB binding in human...
Select this article
Research: Ancient dog introgression into the Iberian wolf genome may have facilitated adaptation to human-dominated landscapes
- Diana Lobo,
- Hernán E. Morales,
- Cock Van Oosterhout,
- José Vicente López-Bao,
- Pedro Silva,
- Luis Llaneza,
- Carolina Pacheco,
- Diana Castro,
- Germán Hernández-Alonso,
- George Pacheco,
- John Archer,
- M. Thomas P. Gilbert,
- Nuno Ferrand,
- and Raquel Godinho
Genome Res. March 2025 35: 432-445; Published in Advance February 14, 2025, doi:10.1101/gr.279093.124
...introgressed genomic regions, mostly stochastically distributed across individuals (Supplemental Figs. S2, S3).Unlike neutral ancient introgression, if introgression conveys a selective advantage, population genetic theory predicts that introgressed genomic regions should be present at high frequency within...
OPEN ACCESS ARTICLE
Select this article
Research: Global identification of mammalian host and nested gene pairs reveal tissue-specific transcriptional interplay
- Bertille Montibus,
- James A. Cain,
- Rocio T. Martinez-Nunez,
- and Rebecca J. Oakey
Genome Res. December 2024 34: 2163-2175; Published in Advance November 22, 2024, doi:10.1101/gr.279430.124
...the chromosome's genomic sequence separated by intergenic stretches of DNA which are devoid of genes, in a strand-specific manner. However, in practice, the genomic organization is more complex, and genes can in reality occupy the same genomic space as each other and are considered as overlapping genes...
OPEN ACCESS ARTICLE
Select this article
Resource: Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations
- Wenyu Zhang,
- Anja Guenther,
- Yuanxiao Gao,
- Kristian Ullrich,
- Bruno Huettel,
- Aftab Ahmad,
- Lei Duan,
- Kaizong Wei,
- and Diethard Tautz
Genome Res. November 2024 34: 2118-2132; Published in Advance September 17, 2024, doi:10.1101/gr.279166.124
...conditions compared to kit v1, while the method of cDNA generation remains unchanged. Each of the three cDNA libraries was sequenced on one SMRT cell of the same sequencing run, and the sequencing reads were analyzed and compared using the same computational approach (see Methods). Comparably high numbers...
Select this article
Method: Density separation of petrous bone powders for optimized ancient DNA yields
- Daniel M. Fernandes,
- Kendra A. Sirak,
- Olivia Cheronet,
- Mario Novak,
- Florian Brück,
- Evelyn Zelger,
- Alejandro Llanos-Lizcano,
- Anna Wagner,
- Anna Zettl,
- Kirsten Mandl,
- Kellie Sara Duffet Carlson,
- Victoria Oberreiter,
- Kadir T. Özdoğan,
- Susanna Sawyer,
- Francesco La Pastina,
- Emanuela Borgia,
- Alfredo Coppa,
- Miroslav Dobeš,
- Petr Velemínský,
- David Reich,
- Lynne S. Bell,
- and Ron Pinhasi
Genome Res. April 2023 33: 622-631; Published in Advance April 18, 2023, doi:10.1101/gr.277714.123
...source of ancient DNA. Genome Res 30: 427–436. doi:10.1101/gr.260141.119 ↵Skoglund P, Storå J, Götherström A, Jakobsson M. 2013. Accurate sex identification of ancient human remains using DNA shotgun sequencing. J Archaeol Sci 40: 4477–4482. doi:10.1016/j.jas.2013.07.004 ↵Skoglund P, Northoff BH, Shunkov...
Select this article
Mini-Review: Large-scale genomic analysis of the domestic dog informs biological discovery
- Reuben M. Buckley and
- Elaine A. Ostrander
Genome Res. June 2024 34: 811-821; Published in Advance July 2, 2024, doi:10.1101/gr.278569.123
...is particularly well characterized compared with other domestic mammals, with almost 3000 high-coverage s publicly available. Importantly, as the number of sequenced s increases, new avenues for analysis are becoming available. Herein, we discuss recent discoveries in canine genomics regarding behavior...
OPEN ACCESS ARTICLE
Select this article
Research: Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization
- Kazuaki Yamaguchi,
- Yoshinobu Uno,
- Mitsutaka Kadota,
- Osamu Nishimura,
- Ryo Nozu,
- Kiyomi Murakumo,
- Rui Matsumoto,
- Keiichi Sato,
- and Shigehiro Kuraku
Genome Res. September 2023 33: 1527-1540; Published in Advance August 17, 2023, doi:10.1101/gr.276840.122
...: In this window In a new window Figure 5. Genomic identification of the zebra shark Chromosome X. (A) Male–female ratio of short-read sequencing depth in the shark chromosomes. (B) Male-female copy-number difference of zebra shark Chromosome X. Amplification levels of the genes on the PAR and the remainders...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Blow et al. 18 (8): 1347.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: