Searching journal content for articles similar to Blanco-Berdugo et al. 36 (1): 50.

Displaying results 1-10 of 5565

For checked items

view abstracts
download to citation manager

Select this article
Method: Read-level genotyping of short tandem repeats using long reads and single-nucleotide variation with STRkit
- David R. Lougheed,
- Tomi Pastinen,
- and Guillaume Bourque
Genome Res. March 2026 36: 578-588; Published in Advance January 15, 2026, doi:10.1101/gr.280766.125
...are modest with HiFi data versus the next best-performing tool, LongTR (Table 2), maximizing precision and accuracy has direct benefits for -wide analysis, in which the statistical power in correlation tests would be reduced by lower-quality genotypes. At similar depths of sequencing coverage, HiFi data...
Select this article
Resource: Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations
- Wenyu Zhang,
- Anja Guenther,
- Yuanxiao Gao,
- Kristian Ullrich,
- Bruno Huettel,
- Aftab Ahmad,
- Lei Duan,
- Kaizong Wei,
- and Diethard Tautz
Genome Res. November 2024 34: 2118-2132; Published in Advance September 17, 2024, doi:10.1101/gr.279166.124
...years, closely related outgroup species (e.g., Mus spretus) are also available in this model system (Harr et al. 2016). We have previously used the house mouse system to study the evolutionary pattern of single nucleotide variants (Staubach et al. 2012), gene copy number variants (Pezer et al. 2015...
Select this article
Research: Inference of selective forces on house mouse genomes during secondary contact in East Asia
- Kazumichi Fujiwara,
- Shunpei Kubo,
- Toshinori Endo,
- Toyoyuki Takada,
- Toshihiko Shiroishi,
- Hitoshi Suzuki,
- and Naoki Osada
Genome Res. March 2024 34: 366-375; Published in Advance March 20, 2024, doi:10.1101/gr.278828.123
...through genetic analysis that it is derived from a hybrid between the subspecies castaneus and musculus (Yonekawa et al. 1980, 1982, 1988; Sakai et al. 2005; Takada et al. 2013), whereas most wild Japanese house mice predominantly have the genetic background of the subspecies musculus (Fujiwara et al...
OPEN ACCESS ARTICLE
Select this article
Resource: Proactive functional classification of all possible missense single-nucleotide variants in KCNQ4
- Honglan Zheng,
- Xinhao Yan,
- Guanluan Li,
- Hengwei Lin,
- Siqi Deng,
- Wenhui Zhuang,
- Fuqiang Yao,
- Yu Lu,
- Xin Xia,
- Huijun Yuan,
- Li Jin,
- and Zhiqiang Yan
Genome Res. August 2022 32: 1573-1584; Published in Advance June 27, 2022, doi:10.1101/gr.276562.122
..., Chengdu 610041, China ↵5 These authors contributed equally to this work. Corresponding author: zqyan@szbl.ac.cnAbstractClinical exome sequencing has yielded extensive disease-related missense single-nucleotide variants (SNVs) of uncertain significance, leading to diagnostic uncertainty. KCNQ4 is one...
Select this article
Research: Androgen receptor–mediated assisted loading of the glucocorticoid receptor modulates transcriptional responses in prostate cancer cells
- Johannes Hiltunen,
- Laura Helminen,
- Niina Aaltonen,
- Kaisa-Mari Launonen,
- Hanna Laakso,
- Marjo Malinen,
- Einari A. Niskanen,
- Jorma J. Palvimo,
- and Ville Paakinaho
Genome Res. August 2025 35: 1717-1732; Published in Advance June 2, 2025, doi:10.1101/gr.280224.124
...Androgen receptor–mediated assisted loading of the glucocorticoid receptor modulates transcriptional responses in prostate cancer cells Johannes Hiltunen1,3, Laura Helminen1,3, Niina Aaltonen1,3, Kaisa-Mari Launonen1, Hanna Laakso1, Marjo Malinen2, Einari A. Niskanen1, Jorma J. Palvimo1 and Ville...
OPEN ACCESS ARTICLE
Select this article
Method: De novo detection of somatic variants in high-quality long-read single-cell RNA sequencing data
- Arthur Dondi,
- Nico Borgsmüller,
- Pedro F. Ferreira,
- Brian J. Haas,
- Francis Jacob,
- Viola Heinzelmann-Schwarz,
- Tumor Profiler Consortium,
- and Niko Beerenwinkel
Genome Res. April 2025 35: 900-913; Published in Advance March 19, 2025, doi:10.1101/gr.279281.124
...high-quality LR scRNA-seq data to call de novo somatic single-nucleotide variants (SNVs), including in mitochondria (mtSNVs), copy number alterations (CNAs), and gene fusions, to reconstruct the tumor clonal heterogeneity. Before somatic variant calling, LongSom reannotates marker gene-based cell types...
OPEN ACCESS ARTICLE
Select this article
Method: De novo antibody identification in human blood from full-length single B cell transcriptomics and matching haplotype-resolved germline assemblies
- John Beaulaurier,
- Lynn Ly,
- J. Andrew Duty,
- Carly Tyer,
- Christian Stevens,
- Chuan-Tien Hung,
- Akash Sookdeo,
- Alex W. Drong,
- Shreyas Kowdle,
- Axel Guzman-Solis,
- Domenico Tortorella,
- Daniel J. Turner,
- Sissel Juul,
- Scott Hickey,
- and Benhur Lee
Genome Res. April 2025 35: 929-941; Published in Advance March 21, 2025, doi:10.1101/gr.279392.124
...of single antibodies and only a modest number of clonal expansions. We surveyed the landscape of antibody features across thousands of MBCs, including isotype, V gene usage, CDR3 lengths, and mutation rates. We observed V gene usage frequencies commonly seen in repertoires of post germinal center, isotype...
OPEN ACCESS ARTICLE
Select this article
Research: The rate and spectrum of new mutations in mice inferred by long-read sequencing
- Eugenio López-Cortegano,
- Jobran Chebib,
- Anika Jonas,
- Anastasia Vock,
- Sven Künzel,
- Peter D. Keightley,
- and Diethard Tautz
Genome Res. January 2025 35: 43-54; Published in Advance December 2, 2024, doi:10.1101/gr.279982.124
...of read and assembly-based methods to call the complete spectrum of new mutations. On average, there are about 45 mutations per haploid per generation, about half of which (54%) are insertions and deletions shorter than 50 bp (indels). The remainder are single-nucleotide mutations (SNMs; 44%) and large...
OPEN ACCESS ARTICLE
Select this article
Research: Hydra has mammal-like mutation rates facilitating fast adaptation despite its nonaging phenotype
- Arne Sahm,
- Konstantin Riege,
- Marco Groth,
- Martin Bens,
- Johann Kraus,
- Martin Fischer,
- Hans Kestler,
- Christoph Englert,
- Ralf Schaible,
- Matthias Platzer,
- and Steve Hoffmann
Genome Res. December 2024 34: 2217-2228; Published in Advance December 4, 2024, doi:10.1101/gr.279025.124
...al. 2019). Thus, our rationale for counting the somatic mutations in each of the I cells is to search for variants that are present neither in any of the E cells nor in the reference of the strain (and vice versa for the E cells). Following this rationale, we identified the somatic single-nucleotide...
OPEN ACCESS ARTICLE
Select this article
Method: Nematode gene annotation by machine-learning-assisted proteotranscriptomics enables proteome-wide evolutionary analysis
- Alejandro Ceron-Noriega,
- Miguel V. Almeida,
- Michal Levin,
- and Falk Butter
Genome Res. January 2023 33: 112-128; Published in Advance January 18, 2023, doi:10.1101/gr.277070.122
...(Bongers and Bongers 1998; Hodda et al. 2009; Blaxter 2016). They inhabit a broad range of ecological niches with lifestyles ranging from free-living to plant and animal parasitic, including varying reproduction modes, morphology, and developmental programs (Kiontke and Fitch 2013; Vlaar et al. 2021...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Blanco-Berdugo et al. 36 (1): 50.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: