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Resource: Genome-wide discovery of human splicing branchpoints
- Tim R. Mercer,
- Michael B. Clark,
- Stacey B. Andersen,
- Marion E. Brunck,
- Wilfried Haerty,
- Joanna Crawford,
- Ryan J. Taft,
- Lars K. Nielsen,
- Marcel E. Dinger,
- and John S. Mattick
Genome Res. February 2015 25: 290-303; Published in Advance January 5, 2015, doi:10.1101/gr.182899.114
...Genome-wide discovery of human splicing branchpoints Tim R. Mercer 1 , 2 , 8 , Michael B. Clark 1 , 3 , 8 , Stacey B. Andersen 4 , Marion E. Brunck 4 , Wilfried Haerty 3 , Joanna Crawford 5 , Ryan J...
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Resource: Large-scale analysis of branchpoint usage across species and cell lines
- Allison J. Taggart,
- Chien-Ling Lin,
- Barsha Shrestha,
- Claire Heintzelman,
- Seongwon Kim,
- and William G. Fairbrother
Genome Res. April 2017 27: 639-649; Published in Advance January 24, 2017, doi:10.1101/gr.202820.115
...to the calling of false branchpoints. In order to survey branch site usage in all regions of human introns, we have analyzed a series of internally generated and public RNA-seq data sets (ENCODE) for lariat reads (The ENCODE Project Consortium 2012; Bitton et al. 2014; Yue et al. 2014). U2snRNP/pre-mRNA base...

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