Searching journal content for articles similar to Betrán et al. 12 (12): 1854.

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  1. Platypus Special/Letter: Retroposed SNOfall—A mammalian-wide comparison of platypus snoRNAs
    • Jürgen Schmitz,
    • Anja Zemann,
    • Gennady Churakov,
    • Heiner Kuhl,
    • Frank Grützner,
    • Richard Reinhardt,
    • and Jürgen Brosius
    Genome Res. June 2008 18: 1005-1010; Published in Advance May 7, 2008, doi:10.1101/gr.7177908
    ...Retroposed SNOfall—A mammalian-wide comparison of platypus snoRNAs Jürgen Schmitz 1 , 4 , Anja Zemann 1 , Gennady Churakov 1 , Heiner Kuhl 2 , Frank Grützner 3 , Richard Reinhardt 2 , and Jürgen Brosius 1...
  2. Research: Death of new microRNA genes in Drosophila via gradual loss of fitness advantages
    • Guang-An Lu,
    • Yixin Zhao,
    • Hao Yang,
    • Ao Lan,
    • Suhua Shi,
    • Zhongqi Liufu,
    • Yumei Huang,
    • Tian Tang,
    • Jin Xu,
    • Xu Shen,
    • and Chung-I Wu
    Genome Res. September 2018 28: 1309-1318; Published in Advance July 26, 2018, doi:10.1101/gr.233809.117
    ...constraints. Noncoding genes, especially small ones, are freer to evolve de novo by comparison. The best examples are microRNAs (miRNAs), a large class of regulatory molecules ∼22 nt in length. Here, we study six de novo miRNAs in Drosophila, which, like most new genes, are testis-specific. We ask how and why...
  3. Research: Evidence for the fixation of gene duplications by positive selection in Drosophila
    • Margarida Cardoso-Moreira,
    • J. Roman Arguello,
    • Srikanth Gottipati,
    • L.G. Harshman,
    • Jennifer K. Grenier,
    • and Andrew G. Clark
    Genome Res. June 2016 26: 787-798; Published in Advance April 12, 2016, doi:10.1101/gr.199323.115
    ...duplicates are initially fixed within populations and later maintained in s. Long-standing debates on the evolution of gene duplications could be settled by determining the relative importance of genetic drift vs. positive selection in the fixation of new gene duplicates. Using the Drosophila Global...
  4. Research: A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster
    • Ge Gao,
    • Maria D. Vibranovski,
    • Li Zhang,
    • Zheng Li,
    • Ming Liu,
    • Yong E. Zhang,
    • Xinmin Li,
    • Wenxia Zhang,
    • Qichang Fan,
    • Nicholas W. VanKuren,
    • Manyuan Long,
    • and Liping Wei
    Genome Res. April 2014 24: 629-638; Published in Advance January 9, 2014, doi:10.1101/gr.165837.113
    ...–1152. ↵ Bachtrog D, Toda NR, Lockton S Bachtrog D, Toda NR, Lockton S. 2010. Dosage compensation and demasculinization of X chromosomes in Drosophila. Curr Biol 20: 1476–1481. ↵ Betrán E, Thornton K, Long M Betrán E, Thornton K, Long M. 2002. Retroposed new genes out of the X in Drosophila. Genome Res 12: 1854...
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  5. Research: Genome-wide analysis of retrogene polymorphisms in Drosophila melanogaster
    • Daniel R. Schrider,
    • Kristian Stevens,
    • Charis M. Cardeño,
    • Charles H. Langley,
    • and Matthew W. Hahn
    Genome Res. December 2011 21: 2087-2095; doi:10.1101/gr.116434.110
    ...rate of origination and convergent acquisition of functional retrogenes in Drosophila. Genome Biol 8: R11. doi: 10.1186/ gb-2007-8-1-r11. Betra´n E, Long M. 2003. Dntf-2r, a young Drosophila retroposed gene with specific male expression under positive Darwinian selection. Genetics 164: 977–988. Betra...
  6. Research: Age-dependent chromosomal distribution of male-biased genes in Drosophila
    • Yong E. Zhang,
    • Maria D. Vibranovski,
    • Benjamin H. Krinsky,
    • and Manyuan Long
    Genome Res. November 2010 20: 1526-1533; Published in Advance August 26, 2010, doi:10.1101/gr.107334.110
    ...in the Drosophila yakuba/Drosophila erecta clade. Genetics 176: 1131. Betran E, Thornton K, Long M. 2002. Retroposed new genes out of the X in Drosophila. Genome Res 12: 1854–1859. Bhutkar A, Russo SM, Smith TF, Gelbart WM. 2007. Genome-scale analysis of positionally relocated genes. Genome Res 17: 1880...
  7. LETTER: On the origin of new genes in Drosophila
    • Qi Zhou,
    • Guojie Zhang,
    • Yue Zhang,
    • Shiyu Xu,
    • Ruoping Zhao,
    • Zubing Zhan,
    • Xin Li,
    • Yun Ding,
    • Shuang Yang,
    • and Wen Wang
    Genome Res. September 2008 18: 1446-1455; Published in Advance June 11, 2008, doi:10.1101/gr.076588.108
    ...On the origin of new genes in Drosophila Qi Zhou 1 , 2 , 4 , Guojie Zhang 1 , 2 , 3 , 4 , Yue Zhang 1 , 4 , Shiyu Xu 1 , Ruoping Zhao 1 , Zubing Zhan 1 , 2 , Xin Li 1 , 2 , Yun Ding 1 , 2...
  8. Research: LTR-mediated retroposition as a mechanism of RNA-based duplication in metazoans
    • Shengjun Tan,
    • Margarida Cardoso-Moreira,
    • Wenwen Shi,
    • Dan Zhang,
    • Jiawei Huang,
    • Yanan Mao,
    • Hangxing Jia,
    • Yaqiong Zhang,
    • Chunyan Chen,
    • Yi Shao,
    • Liang Leng,
    • Zhonghua Liu,
    • Xun Huang,
    • Manyuan Long,
    • and Yong E. Zhang
    Genome Res. December 2016 26: 1663-1675; Published in Advance October 20, 2016, doi:10.1101/gr.204925.116
    .... In Drosophila melanogaster , we identified and de novo assembled 15 polymorphic retrocopies and found that all retroposed loci are chimeras of internal retrocopies flanked by discontinuous LTR retrotransposons. At the fusion points between the mRNAs and the LTR retrotransposons, we identified shared short...
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  9. Letter: General gene movement off the X chromosome in the Drosophila genus
    • Maria D. Vibranovski,
    • Yong Zhang,
    • and Manyuan Long
    Genome Res. May 2009 19: 897-903; Published in Advance February 27, 2009, doi:10.1101/gr.088609.108
    ....J., Ajioka, J.W., and Kreitman, M. 1991. Lack of polymorphism on the Drosophila fourth chromosome resulting from selection. Genetics 129: 1111–1117. Betra´n, E., Thornton, K., and Long, M. 2002. Retroposed new genes out of the X in Drosophila. Genome Res. 12: 1854–1859. Betra´n, E., Emerson, J.J., Kaessmann...
  10. Research: Multiple Pristionchus pacificus genomes reveal distinct evolutionary dynamics between de novo candidates and duplicated genes
    • Neel Prabh and
    • Christian Rödelsperger
    Genome Res. July 2022 32: 1315-1327; Published in Advance May 26, 2022, doi:10.1101/gr.276431.121
    ...sequence in Drosophila (Zile et al. 2020; Li et al. 2021). Recent studies using deep transcriptomics and ribosome-profiling identified thousands of species-specific sequences with evidence of transcription and translation that form the raw material for incipient de novo gene formation (Ruiz-Orera et al...
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