Searching journal content for articles similar to Berger et al. 29 (7): 1164.

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  1. Method: Genome-wide cancer-specific chromatin accessibility patterns derived from archival processed xenograft tumors
    • Shelsa S. Marcel,
    • Austin L. Quimby,
    • Melodie P. Noel,
    • Oscar C. Jaimes,
    • Marjan Mehrab-Mohseni,
    • Suud A. Ashur,
    • Brian Velasco,
    • James K. Tsuruta,
    • Sandeep K. Kasoji,
    • Charlene M. Santos,
    • Paul A. Dayton,
    • Joel S. Parker,
    • Ian J. Davis,
    • and Samantha G. Pattenden
    Genome Res. December 2021 31: 2327-2339; Published in Advance November 23, 2021, doi:10.1101/gr.275219.121
    ...expression and other nuclear processes can be altered in disease. The constellation of transcription factors and chromatin regulatory complexes in cells results in characteristic patterns of chromatin accessibility. The study of these patterns in tissues has been limited because existing chromatin...
  2. Research: Natural variation of histone modification and its impact on gene expression in the rat genome
    • Carola Rintisch,
    • Matthias Heinig,
    • Anja Bauerfeind,
    • Sebastian Schafer,
    • Christin Mieth,
    • Giannino Patone,
    • Oliver Hummel,
    • Wei Chen,
    • Stuart Cook,
    • Edwin Cuppen,
    • Maria Colomé-Tatché,
    • Frank Johannes,
    • Ritsert C. Jansen,
    • Helen Neil,
    • Michel Werner,
    • Michal Pravenec,
    • Martin Vingron,
    • and Norbert Hubner
    Genome Res. June 2014 24: 942-953; Published in Advance May 2, 2014, doi:10.1101/gr.169029.113
    ...with the following changes (Barski et al. 2007): Frozen left ventricular heart and liver tissuewas crunched using pestle and mortar; 125 mg tissue was homogenized in a Potter-Elvehjem tissue grinder, nuclei were isolated by centrifugation through a dense sucrose cushion and digested with micrococcal nuclease (Sigma...
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