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Research: Unexpectedly low recombination rates and presence of hotspots in termite genomes
- Turid Everitt,
- Tilman Rönneburg,
- Daniel Elsner,
- Anna Olsson,
- Yuanzhen Liu,
- Tuuli Larva,
- Judith Korb,
- and Matthew T. Webster
Genome Res. May 2025 35: 1124-1137; Published in Advance March 20, 2025, doi:10.1101/gr.279180.124
...events are mainly restricted to regions that contain specific motifs that act as binding sites for the PR/SET domain 9 (PRDM9) protein that marks regions for double-stranded breaks, which are repaired by recombination during meiosis (Baudat et al. 2010; Myers et al. 2010; Parvanov et al. 2010). Species...
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Method: Characterization of meiotic recombination intermediates through gene knockouts in founder hybrid mice
- Benjamin Davies,
- Gang Zhang,
- Daniela Moralli,
- Samy Alghadban,
- Daniel Biggs,
- Chris Preece,
- Peter Donnelly,
- and Anjali Gupta Hinch
Genome Res. November 2023 33: 2018-2027; Published in Advance November 17, 2023, doi:10.1101/gr.278024.123
...: an asymmetric intermediate at the double-strand break to double-Holliday junction transition of meiotic recombination. Cell 106: 59–70. doi:10.1016/S0092-8674(01)00430-5 ↵Khil PP, Smagulova F, Brick KM, Camerini-Otero RD, Petukhova GV. 2012. Sensitive mapping of recombination hotspots using sequencing...
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Research: Evolutionarily diverse determinants of meiotic DNA break and recombination landscapes across the genome
- Kyle R. Fowler,
- Mariko Sasaki,
- Neta Milman,
- Scott Keeney,
- and Gerald R. Smith
Genome Res. October 2014 24: 1650-1664; Published in Advance July 14, 2014, doi:10.1101/gr.172122.114
..., the mechanisms and machinery of meiotic recombination are highly diverse among species. Developmentally programmed DNA double-strand breaks (DSBs) initiate meiotic recombination in the organisms studied most thoroughly at the molecular level, the budding yeast Saccharomyces cerevisiae and the fission yeast...
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Research: Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions
- Kyuha Choi,
- Xiaohui Zhao,
- Andrew J. Tock,
- Christophe Lambing,
- Charles J. Underwood,
- Thomas J. Hardcastle,
- Heïdi Serra,
- Juhyun Kim,
- Hyun Seob Cho,
- Jaeil Kim,
- Piotr A. Ziolkowski,
- Nataliya E. Yelina,
- Ildoo Hwang,
- Robert A. Martienssen,
- and Ian R. Henderson
Genome Res. April 2018 28: 532-546; Published in Advance March 12, 2018, doi:10.1101/gr.225599.117
...Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA Corresponding author: irh25@cam.ac.ukAbstractMeiotic recombination initiates from DNA double-strand breaks (DSBs) generated by SPO11 topoisomerase-like complexes. Meiotic DSB frequency varies extensively along eukaryotic chromosomes...
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Research: Numerical and spatial patterning of yeast meiotic DNA breaks by Tel1
- Neeman Mohibullah and
- Scott Keeney
Genome Res. February 2017 27: 278-288; Published in Advance December 6, 2016, doi:10.1101/gr.213587.116
...Neeman Mohibullah and Scott Keeney Howard Hughes Medical Institute, Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA Corresponding author: s-keeney@ski.mskcc.org AbstractThe Spo11-generated double-strand breaks (DSBs) that initiate meiotic...
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Research: Epigenetic activation of meiotic recombination near Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation
- Charles J. Underwood,
- Kyuha Choi,
- Christophe Lambing,
- Xiaohui Zhao,
- Heïdi Serra,
- Filipe Borges,
- Joe Simorowski,
- Evan Ernst,
- Yannick Jacob,
- Ian R. Henderson,
- and Robert A. Martienssen
Genome Res. April 2018 28: 519-531; Published in Advance March 12, 2018, doi:10.1101/gr.227116.117
...regions.Meiotic crossovers form via inter-homolog repair of DNA double-strand breaks (DSBs) that are generated by SPO11 topoisomerase-related complexes (Szostak et al. 1983; Keeney et al. 1997; Robert et al. 2016; Vrielynck et al. 2016). Diverse eukaryotes have evidence for recombination hotspots, which...
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Method: Sensitive mapping of recombination hotspots using sequencing-based detection of ssDNA
- Pavel P. Khil,
- Fatima Smagulova,
- Kevin M. Brick,
- R. Daniel Camerini-Otero,
- and Galina V. Petukhova
Genome Res. May 2012 22: 957-965; Published in Advance February 24, 2012, doi:10.1101/gr.130583.111
...been incorporated into the s of higher organisms. Science 161: 529–540. ↵ Buhler C, Borde V, Lichten M Buhler C, Borde V, Lichten M. 2007. Mapping meiotic single-strand DNA reveals a new landscape of DNA double-strand breaks in Saccharomyces cerevisiae. PLoS Biol 5: e324. doi: 10.1371/journal...
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Research: Stable and dynamic nucleosome states during a meiotic developmental process
- Liye Zhang,
- Hong Ma,
- and B. Franklin Pugh
Genome Res. June 2011 21: 875-884; Published in Advance April 22, 2011, doi:10.1101/gr.117465.110
...in the human . Cell 129: 823–837. Berchowitz LE, Hanlon SE, Lieb JD, Copenhaver GP. 2009. A positive but complex association betweenmeiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae. Genome Res 19: 2245–2257. Bernstein BE, Humphrey EL, Erlich RL, Schneider R, Bouman P, Liu JS...
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Method: Mapping genomic hotspots of DNA damage by a single-strand-DNA-compatible and strand-specific ChIP-seq method
- Zhi-Xiong Zhou,
- Mei-Jun Zhang,
- Xu Peng,
- Yuko Takayama,
- Xing-Ya Xu,
- Ling-Zhi Huang,
- and Li-Lin Du
Genome Res. April 2013 23: 705-715; Published in Advance December 17, 2012, doi:10.1101/gr.146357.112
...single-strand DNA reveals a new landscape of DNA double-strand breaks in Saccharomyces cerevisiae. PLoS Biol 5: e324. Cam HP, Noma K, Ebina H, Levin HL, Grewal SIS. 2008. Host surveillance for retrotransposons by transposon-derived proteins. Nature 451: 431–436. Chan JE, Kolodner RD. 2011. A genetic...
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Research: Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis
- Pingli Lu,
- Xinwei Han,
- Ji Qi,
- Jiange Yang,
- Asela J. Wijeratne,
- Tao Li,
- and Hong Ma
Genome Res. March 2012 22: 508-518; Published in Advance November 21, 2011, doi:10.1101/gr.127522.111
...significantly to the understanding of the molecular basis of meiotic recombination, including strong support for the steps in the double-strand break repair model 7These authors contribued equally to this work. 8Present address: Molecular and Cellular Imaging Center (MCIC), Ohio State University/OARDC, Wooster...
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