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Research: Temperature dependence of spontaneous mutation rates
- Ann-Marie Waldvogel and
- Markus Pfenninger
Genome Res. September 2021 31: 1582-1589; Published in Advance July 23, 2021, doi:10.1101/gr.275168.120
...↵Barzilai A, Yamamoto KI. 2004. DNA damage responses to oxidative stress. DNA Repair (Amst) 3: 1109–1115. doi:10.1016/j.dnarep.2004.03.002 ↵Belfield EJ, Brown C, Ding ZJ, Chapman L, Luo M, Hinde E, van Es SW, Johnson S, Ning Y, Zheng SJ, et al. 2021. Thermal stress accelerates Arabidopsis thaliana mutation...
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Research: Mutability of mononucleotide repeats, not oxidative stress, explains the discrepancy between laboratory-accumulated mutations and the natural allele-frequency spectrum in C. elegans
- Moein Rajaei,
- Ayush Shekhar Saxena,
- Lindsay M. Johnson,
- Michael C. Snyder,
- Timothy A. Crombie,
- Robyn E. Tanny,
- Erik C. Andersen,
- Joanna Joyner-Matos,
- and Charles F. Baer
Genome Res. September 2021 31: 1602-1613; Published in Advance August 17, 2021, doi:10.1101/gr.275372.121
...in Arabidopsis thaliana MA lines cultured under conditions of heat stress (Belfield et al. 2021). Drosophila melanogaster MA lines initiated from s carrying deleterious large-effect mutations experience higher rates of short deletions than wild-type MA lines, thought to be owing to preferential deployment...
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Research: Global characterization of somatic mutations and DNA methylation changes during vegetative propagation in strawberries
- Shaoqiang Hu,
- Xiangguo Zeng,
- Yuguo Liu,
- Yongping Li,
- Minghao Qu,
- Wen-Biao Jiao,
- Yongchao Han,
- and Chunying Kang
Genome Res. October 2024 34: 1582-1594; Published in Advance October 15, 2024, doi:10.1101/gr.279378.124
...and nucleotide resolution in plants.Every somatic cell in both animals and plants can carry new mutations during growth in response to either inherent or environmental stresses, called somatic mutations. Most horticultural plants are propagated vegetatively over many years and can accumulate a large number...
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Research: Loss of histone H3.3 results in DNA replication defects and altered origin dynamics in C. elegans
- Maude Strobino,
- Joanna M. Wenda,
- Laura Padayachy,
- and Florian A. Steiner
Genome Res. December 2020 30: 1740-1751; Published in Advance November 10, 2020, doi:10.1101/gr.260794.120
.... Cell 155: 94–106. doi:10.1016/j.cell.2013.08.029 ↵Begasse ML, Leaver M, Vazquez F, Grill SW, Hyman AA. 2015. Temperature dependence of cell division timing accounts for a shift in the thermal limits of C. elegans and C. briggsae. Cell Rep 10: 647–653. doi:10.1016/j.celrep.2015.01.006 ↵Besnard E, Babled...
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ARTICLE: Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris
- Wei Qian,
- Yantao Jia,
- Shuang-Xi Ren,
- Yong-Qiang He,
- Jia-Xun Feng,
- Ling-Feng Lu,
- Qihong Sun,
- Ge Ying,
- Dong-Jie Tang,
- Hua Tang,
- Wei Wu,
- Pei Hao,
- Lifeng Wang,
- Bo-Le Jiang,
- Shenyan Zeng,
- Wen-Yi Gu,
- Gang Lu,
- Li Rong,
- Yingchuan Tian,
- Zhijian Yao,
- Gang Fu,
- Baoshan Chen,
- Rongxiang Fang,
- Boqin Qiang,
- Zhu Chen,
- Guo-Ping Zhao,
- Ji-Liang Tang,
- and Chaozu He
Genome Res. June 2005 15: 757-767; Published in Advance May 17, 2005, doi:10.1101/gr.3378705
...margin ( Alvarez 2000 ). Xcc invades into plant tissues through hydathodes, stomates, roots, or wounds, and infects a wide range of plants in the crucifer family ( Brassicaceae ), including broccoli, cabbage, cauliflower, radish, and the model plant Arabidopsis thaliana . Thus, this bacterium represents...
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ARTICLE: Phylogeny of the Serpin Superfamily: Implications of Patterns of Amino Acid Conservation for Structure and Function
- James A. Irving,
- Robert N. Pike,
- Arthur M. Lesk,
- and James C. Whisstock
Genome Res. December 1, 2000 10: 1845-1864; Published in Advance November 21, 2000, doi:10.1101/gr.147800
...( Felsenstein 1985 ). Sequences are identified by species and name abbreviations, followed by the GenPept accession number in brackets. Species abbreviations: ( aae ) Aedes aegypti ; ( asy ) Apodemus sylvaticus ; ( ath ) Arabidopsis thaliana ; ( afa ) Avena fatua ; ( bmo ) Bombyx mori ; ( bta ) Bos taurus...
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LETTER: B-ZIP Proteins Encoded by the Drosophila Genome: Evaluation of Potential Dimerization Partners
- Jan Fassler,
- David Landsman,
- Asha Acharya,
- Jonathan R. Moll,
- Maria Bonovich,
- and Charles Vinson
Genome Res. August 1, 2002 12: 1190-1200; doi:10.1101/gr.67902
.... Twelve leucine zippers contain polar amino acids in the first, third, and fourth ‘a’ positions. Circular dichroism spectroscopy, used to monitor thermal denaturations of a heterodimerizing leucine zipper system containing either valine (V) or asparagine (N) in the ‘a’ position, indicates that the V...
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LETTER: Temperature-Regulated Transcription in the Pathogenic Fungus Cryptococcus neoformans
- Barbara R. Steen,
- Tian Lian,
- Scott Zuyderduyn,
- William Kim MacDonald,
- Marco Marra,
- Steven J.M. Jones,
- and James W. Kronstad
Genome Res. September 1, 2002 12: 1386-1400; doi:10.1101/gr.80202
...agents via inhalation. Recently, it has been shown that stable diploid strains of C. neoformans can be obtained from crosses of compatible haploid mating partners ( Sia et al. 2000 ). These diploid strains are thermally dimorphic in that they grow as yeast at 37°C and have a filamentous morphology at 24...

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