Searching journal content for articles similar to Bar-Yaacov et al. 23 (11): 1789.

Displaying results 1-6 of 6

For checked items

view abstracts
download to citation manager

Select this article
Research: RNA–DNA sequence differences in Saccharomyces cerevisiae
- Isabel X. Wang,
- Christopher Grunseich,
- Youree G. Chung,
- Hojoong Kwak,
- Girish Ramrattan,
- Zhengwei Zhu,
- and Vivian G. Cheung
Genome Res. November 2016 26: 1544-1554; Published in Advance September 16, 2016, doi:10.1101/gr.207878.116
...the control of a GAL1 promoter and induced their expression in yeast tup1 knockout strain. By Western blot, we showed that the protein level of the RNA form (V459) of Tup1 is higher than that of the DNA form (A459), Table 1. Examples of RDDs in genes that play a role in ribosome biogenesis RDD levels (%) Gene...
OPEN ACCESS ARTICLE
Select this article
Research: Cancer-associated rs6983267 SNP and its accompanying long noncoding RNA CCAT2 induce myeloid malignancies via unique SNP-specific RNA mutations
- Maitri Y. Shah,
- Manuela Ferracin,
- Valentina Pileczki,
- Baoqing Chen,
- Roxana Redis,
- Linda Fabris,
- Xinna Zhang,
- Cristina Ivan,
- Masayoshi Shimizu,
- Cristian Rodriguez-Aguayo,
- Mihnea Dragomir,
- Katrien Van Roosbroeck,
- Maria Ines Almeida,
- Maria Ciccone,
- Daniela Nedelcu,
- Maria Angelica Cortez,
- Taghi Manshouri,
- Steliana Calin,
- Muharrem Muftuoglu,
- Pinaki P. Banerjee,
- Mustafa H. Badiwi,
- Jan Parker-Thornburg,
- Asha Multani,
- James William Welsh,
- Marcos Roberto Estecio,
- Hui Ling,
- Ciprian Tomuleasa,
- Delia Dima,
- Hui Yang,
- Hector Alvarez,
- M. James You,
- Milan Radovich,
- Elizabeth Shpall,
- Muller Fabbri,
- Katy Rezvani,
- Leonard Girnita,
- Ioana Berindan-Neagoe,
- Anirban Maitra,
- Srdan Verstovsek,
- Riccardo Fodde,
- Carlos Bueso-Ramos,
- Mihai Gagea,
- Guillermo Garcia Manero,
- and George A. Calin
Genome Res. April 2018 28: 432-447; Published in Advance March 22, 2018, doi:10.1101/gr.225128.117
...mice. The RNA transcribed from the SNP locus in malignant hematopoietic cells have different allelic composition from the corresponding genomic DNA, a phenomenon rarely observed in normal cells. Our findings provide fundamental insights into the functional role of rs6983267 SNP and CCAT2 in myeloid...
Select this article
Research: RNA editing in bacteria recodes multiple proteins and regulates an evolutionarily conserved toxin-antitoxin system
- Dan Bar-Yaacov,
- Ernest Mordret,
- Ruth Towers,
- Tammy Biniashvili,
- Clara Soyris,
- Schraga Schwartz,
- Orna Dahan,
- and Yitzhak Pilpel
Genome Res. October 2017 27: 1696-1703; Published in Advance September 1, 2017, doi:10.1101/gr.222760.117
..., Zarivach R, Mishmar D. 2013. RNA–DNA differences in human mitochondria restore ancestral form of 16S ribosomal RNA. Genome Res 23: 1789–1796. Bar-Yaacov D, Frumkin I, Yashiro Y, Chujo T, Ishigami Y, Chemla Y, Blumberg A, Schlesinger O, Bieri P, Greber B. 2016. Mitochondrial 16S rRNA is methylated by tRNA...
Select this article
Research: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution
- Amit Blumberg,
- Edward J. Rice,
- Anshul Kundaje,
- Charles G. Danko,
- and Dan Mishmar
Genome Res. March 2017 27: 362-373; Published in Advance January 3, 2017, doi:10.1101/gr.209924.116
...factors (TFAM and TFB2M) (Shutt and Shadel 2010). Moreover, mtDNA genes are cotranscribed in a strand-specific manner (Aloni and Attardi 1971): the heavy-strand (i.e., 12 mRNAs, 14 tRNAs, and two ribosomal RNAs) and light-strand (one mRNA and eight tRNAs) polycistrones, relics of the mitochondrial ancient...
Select this article
Research: Localized hypermutation and associated gene losses in legume chloroplast genomes
- Alan M. Magee,
- Sue Aspinall,
- Danny W. Rice,
- Brian P. Cusack,
- Marie Sémon,
- Antoinette S. Perry,
- Saša Stefanović,
- Dan Milbourne,
- Susanne Barth,
- Jeffrey D. Palmer,
- John C. Gray,
- Tony A. Kavanagh,
- and Kenneth H. Wolfe
Genome Res. December 2010 20: 1700-1710; Published in Advance October 26, 2010, doi:10.1101/gr.111955.110
...proteins because we inferred protein sequences from chloroplast DNA sequences, whereas some chloroplast transcripts are known to undergo mRNA editing (Stern et al. 2010). Editing in angiosperms involves C ! U changes and typically occurs at 30–40 sites per (Tsudzuki et al. 2001; Inada et al. 2004). However...
Select this article
Research: Preservation of genetic and regulatory robustness in ancient gene duplicates of Saccharomyces cerevisiae
- Orla M. Keane,
- Christina Toft,
- Lorenzo Carretero-Paulet,
- Gary W. Jones,
- and Mario A. Fares
Genome Res. November 2014 24: 1830-1841; Published in Advance August 22, 2014, doi:10.1101/gr.176792.114
...al. 2005). We therefore analyzed the difference in the expression levels (DE) between the copies (a and b) of a duplicate as DEa;b = 2absðEa EbÞ Ea +Eb : ð3Þ Expression levels were obtained using RNA sequencing data and are available in Supplemental Table S4 from a previous study (Nagalakshmi et al...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Bar-Yaacov et al. 23 (11): 1789.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: