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Research: Comparative genomics of Cryptosporidium parvum reveals the emergence of an outbreak-associated population in Europe and its spread to the United States
- Greta Bellinzona,
- Tiago Nardi,
- Michele Castelli,
- Gherard Batisti Biffignandi,
- Karim Adjou,
- Martha Betson,
- Yannick Blanchard,
- Ioana Bujila,
- Rachel Chalmers,
- Rebecca Davidson,
- Nicoletta D'Avino,
- Tuulia Enbom,
- Jacinto Gomes,
- Gregory Karadjian,
- Christian Klotz,
- Emma Östlund,
- Judith Plutzer,
- Ruska Rimhanen-Finne,
- Guy Robinson,
- Anna Rosa Sannella,
- Jacek Sroka,
- Christen Rune Stensvold,
- Karin Troell,
- Paolo Vatta,
- Barbora Zalewska,
- Claudio Bandi,
- Davide Sassera,
- and Simone M. Cacciò
Genome Res. June 2024 34: 877-887; Published in Advance July 8, 2024, doi:10.1101/gr.278830.123
....caccio@iss.itAbstractThe zoonotic parasite Cryptosporidium parvum is a global cause of gastrointestinal disease in humans and ruminants. Sequence analysis of the highly polymorphic gp60 gene enabled the classification of C. parvum isolates into multiple groups (e.g., IIa, IIc, Id) and a large number of subtypes. In Europe, subtype...
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Resource: Long-read assembly and comparative evidence-based reanalysis of Cryptosporidium genome sequences reveal expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions
- Rodrigo P. Baptista,
- Yiran Li,
- Adam Sateriale,
- Mandy J. Sanders,
- Karen L. Brooks,
- Alan Tracey,
- Brendan R.E. Ansell,
- Aaron R. Jex,
- Garrett W. Cooper,
- Ethan D. Smith,
- Rui Xiao,
- Jennifer E. Dumaine,
- Peter Georgeson,
- Bernard J. Pope,
- Matthew Berriman,
- Boris Striepen,
- James A. Cotton,
- and Jessica C. Kissinger
Genome Res. January 2022 32: 203-213; Published in Advance November 11, 2021, doi:10.1101/gr.275325.121
.... Integrated mapping, chromosomal sequencing and sequence analysis of Cryptosporidium parvum. Genome Res 13: 1787–1799. doi:10.1101/gr.1555203 ↵Baptista RP, Kissinger JC. 2019. Is reliance on an inaccurate sequence sabotaging your experiments? PLoS Pathog 15: e1007901. doi:10.1371/journal.ppat.1007901...
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LETTER: Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization
- King-Hwa Ling,
- Marie-Adele Rajandream,
- Pierre Rivailler,
- Alasdair Ivens,
- Soon-Joo Yap,
- Alda M.B.N. Madeira,
- Karen Mungall,
- Karen Billington,
- Wai-Yan Yee,
- Alan T. Bankier,
- Fionnadh Carroll,
- Alan M. Durham,
- Nicholas Peters,
- Shu-San Loo,
- Mohd Noor Mat Isa,
- Jeniffer Novaes,
- Michael Quail,
- Rozita Rosli,
- Mariana Nor Shamsudin,
- Tiago J.P. Sobreira,
- Adrian R. Tivey,
- Siew-Fun Wai,
- Sarah White,
- Xikun Wu,
- Arnaud Kerhornou,
- Damer Blake,
- Rahmah Mohamed,
- Martin Shirley,
- Arthur Gruber,
- Matthew Berriman,
- Fiona Tomley,
- Paul H. Dear,
- and Kiew-Lian Wan
Genome Res. March 2007 17: 311-319; Published in Advance February 6, 2007, doi:10.1101/gr.5823007
...Immunol. 8 : 529 – 539 . ↵ Bankier, A.T. , Spriggs, H.F. , Fartmann, B. , Konfortov, B.A. , Madera, M. , Vogel, C. , Teichmann, S.A. , Ivens, A. , Dear, P.H. ( 2003 ) Integrated mapping, chromosomal sequencing and sequence analysis of Cryptosporidium parvum . Genomics 1 : 1787 – 1799 . ↵ Benson, G. ( 1999...
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PERSPECTIVE: Insights on biology and evolution from microbial genome sequencing
- Claire M. Fraser-Liggett
Genome Res. December 2005 15: 1603-1610; doi:10.1101/gr.3724205
...., Tzipori, S. et al. 2004 . Complete sequence of the apicomplexan, Cryptosporidium parvum . Science 304 : 441 -445. ↵ Andersson, S.G. and Kurland, C.G. 1998 . Reductive evolution of resident s. Trends Microbiol. 6 : 263 -268. ↵ Bapteste, E., Boucher, Y., Leigh, J., and Doolittle, W.F. 2004 . Phylogenetic...
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RESOURCE: Computational modeling of the Plasmodium falciparum interactome reveals protein function on a genome-wide scale
- Shailesh V. Date and
- Christian J. Stoeckert, Jr.
Genome Res. April 2006 16: 542-549; Published in Advance March 6, 2006, doi:10.1101/gr.4573206
...Laboratory Press References ↵ Abrahamsen M.S. , Templeton T.J. , Enomoto S. , Abrahante J.E. , Zhu G. , Lancto C.A. , Deng M. , Liu C. , Widmer G. , Tzipori S. , et al. ( 2004 ) Complete sequence of the apicomplexan, Cryptosporidium parvum. Science 304 : 441 – 445 . ↵ Adai A.T. , Date S.V. , Wieland S...
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Research: Genome-wide relaxation of selection and the evolution of the island syndrome in Orkney voles
- Xuejing Wang and
- Gerald Heckel
Genome Res. June 2024 34: 851-862; Published in Advance July 2, 2024, doi:10.1101/gr.278487.123
...displays a different pathogen community compared with the continental region of origin, which triggered immune system evolution. A few available studies suggest lower pathogen diversity (amoebas in rodents [Fulton and Joyner 1948] and Cryptosporidium in cattle [Morrison et al. 2008]) or infection rate...
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ERRATUM: Correction for Volume 13, p. 1787 Genome Res. February 2004 14: 327

...1088-9051 genome;14/2/327-a Correction for Volume 13, p. 1787 Correction for Volume 13, p. 1787 Genome Research 13: 1787-1799 (2003) Integrated Mapping, Chromosomal Sequencing and Sequence Analysis of Cryptosporidium parvum Alan T. Bankier, Helen F. Spriggs, Berthold Fartmann, Bernard A. Konfortov...
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ERRATUM: Correction for Volume 13, p. 2717 Genome Res. February 2004 14: 327

...of the per pool, and p is the probability of two or more clones of different alleles in one pool. The editors apologize for any confusion this may have caused. Genome Research 13: 1787–1799 (2003) Integrated Mapping, Chromosomal Sequencing and Sequence Analysis of Cryptosporidium parvum Alan T. Bankier...
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LETTER: A High-Resolution HAPPY Map of Dictyostelium discoideum Chromosome 6
- Bernard A. Konfortov,
- Helen M. Cohen,
- Alan T. Bankier,
- and Paul H. Dear
Genome Res. November 1, 2000 10: 1737-1742; doi:10.1101/gr.141700
...M.B. , Bankier A.T. , Dear P.H. ( 1998 ) HAPPY map of Cryptosporidium parvum. Genome Res. 8 : 1299 – 1307 . ↵ Stewart E.A. , Cox D.R. Dear P.H. ( 1997 ) Radiation hybrid mapping. in Genome mapping: A practical approach , ed Dear P.H. ( IRL , Oxford ), pp 73 – 93 . ↵ Walter G. , Tomlinson I.M. , Cook...
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LETTER: Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes
- Schraga Schwartz,
- João Silva,
- David Burstein,
- Tal Pupko,
- Eduardo Eyras,
- and Gil Ast
Genome Res. January 2008 18: 88-103; Published in Advance November 21, 2007, doi:10.1101/gr.6818908
..., as reflected by the percentage of genes with introns and by the measure of intron density; hemiascomycetous fungi and the protozoan Cryptosporidium parvum were extremely intron poor; non-hemiascomycetous fungi and the protozoan Dictyostelium discoideum formed an intermediate group. Variations were also...

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