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Research: Aberrant PRDM9 expression impacts the pan-cancer genomic landscape
- Armande Ang Houle,
- Heather Gibling,
- Fabien C. Lamaze,
- Hilary A. Edgington,
- David Soave,
- Marie-Julie Fave,
- Mawusse Agbessi,
- Vanessa Bruat,
- Lincoln D. Stein,
- and Philip Awadalla
Genome Res. November 2018 28: 1611-1620; Published in Advance October 19, 2018, doi:10.1101/gr.231696.117
...binding organizes hotspot nucleosomes and limits Holliday junction migration. Genome Res 24: 724–732. ↵Baudat F, de Massy B. 2007. Regulating double-stranded DNA break repair towards crossover or non-crossover during mammalian meiosis. Chromosome Res 15: 565–577. ↵Baudat F, Buard J, Grey C, Fledel-Alon A...
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Research: Histone methyltransferase PRDM9 is not essential for meiosis in male mice
- Ondrej Mihola,
- Florencia Pratto,
- Kevin Brick,
- Eliska Linhartova,
- Tatyana Kobets,
- Petr Flachs,
- Christopher L. Baker,
- Radislav Sedlacek,
- Kenneth Paigen,
- Petko M. Petkov,
- R. Daniel Camerini-Otero,
- and Zdenek Trachtulec
Genome Res. July 2019 29: 1078-1086; Published in Advance June 11, 2019, doi:10.1101/gr.244426.118
...M, Kajita S, Petkov PM, Paigen K. 2014. PRDM9 binding organizes hotspot nucleosomes and limits Holliday junction migration. Genome Res 24: 724–732. doi:10.1101/gr.170167.113 ↵Baker CL, Kajita S, Walker M, Saxl RL, Raghupathy N, Choi K, Petkov PM, Paigen K. 2015a. PRDM9 drives evolutionary erosion...
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Research: In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites
- Corinne Grey,
- Julie A.J. Clément,
- Jérôme Buard,
- Benjamin Leblanc,
- Ivo Gut,
- Marta Gut,
- Laurent Duret,
- and Bernard de Massy
Genome Res. April 2017 27: 580-590; Published in Advance March 23, 2017, doi:10.1101/gr.217240.116
.... 2014. PRDM9 binding organizes hotspot nucleosomes and limits Holliday junctionmigration. Genome Res 24: 724–732. Baker CL, Kajita S, Walker M, Saxl RL, Raghupathy N, Choi K, Petkov PM, Paigen K. 2015. PRDM9 drives evolutionary erosion of hotspots in Mus musculus through haplotype-specific initiation...
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Research: Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions
- Kyuha Choi,
- Xiaohui Zhao,
- Andrew J. Tock,
- Christophe Lambing,
- Charles J. Underwood,
- Thomas J. Hardcastle,
- Heïdi Serra,
- Juhyun Kim,
- Hyun Seob Cho,
- Jaeil Kim,
- Piotr A. Ziolkowski,
- Nataliya E. Yelina,
- Ildoo Hwang,
- Robert A. Martienssen,
- and Ian R. Henderson
Genome Res. April 2018 28: 532-546; Published in Advance March 12, 2018, doi:10.1101/gr.225599.117
...histone H3K4me3 and H3K36me3 (Mihola et al. 2009; Baudat et al. 2010; Myers et al. 2010; Parvanov et al. 2010; Grey et al. 2011, 2017; Brick et al. 2012; Lange et al. 2016; Powers et al. 2016). As a consequence, PRDM9-dependent SPO11 hotspots occur in nucleosome-depleted regions with well...
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Research: Genome-wide variability in recombination activity is associated with meiotic chromatin organization
- Xiaofan Jin,
- Geoff Fudenberg,
- and Katherine S. Pollard
Genome Res. September 2021 31: 1561-1572; Published in Advance July 23, 2021, doi:10.1101/gr.275358.121
...during meiosis. Errors in this process lead to negative health outcomes, whereas variability in recombination rate affects evolution. In mammals, most crossovers occur in hotspots defined by PRDM9 motifs, although PRDM9 binding peaks are not all equally hot. We hypothesize that dynamic patterns...
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Research: Widespread association of the Argonaute protein AGO2 with meiotic chromatin suggests a distinct nuclear function in mammalian male reproduction
- Kimberly N. Griffin,
- Benjamin William Walters,
- Haixin Li,
- Huafeng Wang,
- Giulia Biancon,
- Toma Tebaldi,
- Carolyn B. Kaya,
- Jean Kanyo,
- TuKiet T. Lam,
- Andy L. Cox,
- Stephanie Halene,
- Jean-Ju Chung,
- and Bluma J. Lesch
Genome Res. September 2022 32: 1655-1668; Published in Advance September 15, 2022, doi:10.1101/gr.276578.122
..., chromosomes condense and pair with homologs, and double-strand breaks are first induced and then repaired in a highly coordinated manner. After meiosis, the nucleus undergoes extreme compaction to form the mature sperm head, including substitution of most nucleosomes with specialized packaging proteins (Braun...

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