Searching journal content for articles similar to Baillie and Rose 10 (8): 1071.

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  1. Methods: Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
    • Aaron C.E. Darling,
    • Bob Mau,
    • Frederick R. Blattner,
    • and Nicole T. Perna
    Genome Res. July 2004 14: 1394-1403; doi:10.1101/gr.2289704
    ...Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements Aaron C.E. Darling 1 , 2 , 6 , Bob Mau 2 , 3 , Frederick R. Blattner 4 , 5 , and Nicole T. Perna 2 , 5 1 Department of Computer Science, University...
  2. METHODS: AVID: A Global Alignment Program
    • Nick Bray,
    • Inna Dubchak,
    • and Lior Pachter
    Genome Res. January 1, 2003 13: 97-102; Published in Advance December 30, 2002, doi:10.1101/gr.789803
    ...94720, USA Abstract In this paper we describe a new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical for sequence alignments of large genomic regions up to megabases long. We present numerous applications of the method, ranging from...
  3. METHODS: SLAM: Cross-Species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model
    • Marina Alexandersson,
    • Simon Cawley,
    • and Lior Pachter
    Genome Res. March 1, 2003 13: 496-502; Published in Advance February 12, 2003, doi:10.1101/gr.424203
    ..., motivated by the success of comparative genomics in identifying regulatory elements, Hardison et al. (1997) suggested sequencing the mouse for the purpose of annotating the human . Comparative gene finding with such large volumes of data requires formalization and automation of methods. This process began...
  4. METHODS: LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA
    • Michael Brudno,
    • Chuong B. Do,
    • Gregory M. Cooper,
    • Michael F. Kim,
    • Eugene Davydov,
    • NISC Comparative Sequencing Program,
    • Eric D. Green,
    • Arend Sidow,
    • and Serafim Batzoglou
    Genome Res. April 1, 2003 13: 721-731; Published in Advance March 12, 2003, doi:10.1101/gr.926603
    ...methods have been developed recently: DIALIGN ( Morgenstern et al. 1998 , Brudno and Morgenstern 2002 ), MUMmer ( Delcher et al. 1999 , 2002 ), GLASS ( Batzoglou et al. 2000 ), WABA ( Kent and Zahler 2000 ), and AVID ( Bray et al. 2003 ). Most of these methods have proven effective in aligning genomic...
  5. ARTICLE: Fourfold Faster Rate of Genome Rearrangement in Nematodes Than in Drosophila
    • Avril Coghlan and
    • Kenneth H. Wolfe
    Genome Res. June 1, 2002 12: 857-867; doi:10.1101/gr.172702
    ...Fourfold Faster Rate of Genome Rearrangement in Nematodes Than in Drosophila Avril Coghlan and Kenneth H. Wolfe 1 Department of Genetics, Smurfit Institute, University of Dublin, Trinity College, Dublin 2, Ireland Abstract We compared the genome...
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