Searching journal content for articles similar to Aznarez et al. 18 (8): 1247.

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  1. Method: Quantitative evaluation of all hexamers as exonic splicing elements
    • Shengdong Ke,
    • Shulian Shang,
    • Sergey M. Kalachikov,
    • Irina Morozova,
    • Lin Yu,
    • James J. Russo,
    • Jingyue Ju,
    • and Lawrence A. Chasin
    Genome Res. August 2011 21: 1360-1374; Published in Advance June 9, 2011, doi:10.1101/gr.119628.110
    ...is inferred rather than measured. Global transcriptome analyses have also been used to identify splicing regulatory motifs. Here, not only are sequences identified, but they can also be assigned roles in tissue-specific (Castle et al. 2008) or environmentally cued (Hartmann et al. 2009) alternative splicing...
  2. Resource: A comprehensive analysis of 3′ end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation
    • Andreas J. Gruber,
    • Ralf Schmidt,
    • Andreas R. Gruber,
    • Georges Martin,
    • Souvik Ghosh,
    • Manuel Belmadani,
    • Walter Keller,
    • and Mihaela Zavolan
    Genome Res. August 2016 26: 1145-1159; Published in Advance July 5, 2016, doi:10.1101/gr.202432.115
    ...and polyadenylation Several proteins (ELAVL1, TIA1, TIAL1, U2AF2, CPEB2 andCPEB4, HNRNPC) that regulate pre-mRNA splicing and polyadenylation, as well as mRNA stability andmetabolism, have also been reported to bind U-rich elements (Ray et al. 2013). Of these, HNRNPC has been recently studied with crosslinking...
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  3. Research: Signatures of RNA binding proteins globally coupled to effective microRNA target sites
    • Anders Jacobsen,
    • Jiayu Wen,
    • Debora S. Marks,
    • and Anders Krogh
    Genome Res. August 2010 20: 1010-1019; Published in Advance May 27, 2010, doi:10.1101/gr.103259.109
    ...expressed in neurons where it is involved in memory and learning processes (Akamatsu et al. 2005). Further supporting the association of these motifs with RNA protein binding, a set of intronic URMs strikingly similar to the URM2 motif was recently found to regulate alternative splicing via the TIA1/TIAL...
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