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PERSPECTIVE: Chicken genome: Current status and future opportunities
- David W. Burt
Genome Res. December 2005 15: 1692-1698; doi:10.1101/gr.4141805
...., Webster, M.T., Smith, N.G.C., Burt, D.W., and Ellegren, H. 2005 . Comparison of the chicken and turkey s reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes. Genome Res. 15 : 120 -125. ↵ Boardman, P.E., Sanz-Ezquerro, J., Overton, I.M., Burt, D.W., Bosch, E., Fong, W...
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Resource: A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate
- Martien A.M. Groenen,
- Per Wahlberg,
- Mario Foglio,
- Hans H. Cheng,
- Hendrik-Jan Megens,
- Richard P.M.A. Crooijmans,
- Francois Besnier,
- Mark Lathrop,
- William M. Muir,
- Gane Ka-Shu Wong,
- Ivo Gut,
- and Leif Andersson
Genome Res. March 2009 19: 510-519; Published in Advance December 16, 2008, doi:10.1101/gr.086538.108
...is observed within the p-arm of this chromosome. Interestingly, a comparison between the karyotypes of chicken, turkey, and other birds indicates that chicken chromosome 4 is the result of a fusion between a macrochromosome and a microchromosome in the lineage leading to chicken ( Griffin et al. 2008...
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Research: Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes
- Stephen R. Voss,
- D. Kevin Kump,
- Srikrishna Putta,
- Nathan Pauly,
- Anna Reynolds,
- Rema J. Henry,
- Saritha Basa,
- John A. Walker,
- and Jeramiah J. Smith
Genome Res. August 2011 21: 1306-1312; Published in Advance April 11, 2011, doi:10.1101/gr.116491.110
..., Morishita S. 2007. Reconstruction of the vertebrate ancestral reveals dynamic reorganization in early vertebrates. Genome Res 17: 1254–1265. Nanda I, Benisch P, Fetting D, Haaf T, Schmid M. 2011. Synteny conservation of chicken macrochromosomes 1-10 in different avian lineages revealed by cross...
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Research: Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution
- Martin Völker,
- Niclas Backström,
- Benjamin M. Skinner,
- Elizabeth J. Langley,
- Sydney K. Bunzey,
- Hans Ellegren,
- and Darren K. Griffin
Genome Res. April 2010 20: 503-511; Published in Advance March 31, 2010, doi:10.1101/gr.103663.109
...with about 2n = 80 chromosomes, comprising fewmacro- and many small microchromosomes, and a ZZ/ZW sex chromosome pair (Christidis 1990; Rodionov 1997; Griffin et al. 2007). In linewith the above data, recent studies of CNVs in turkey and duck (relative to chicken) have suggested that bird s also contain...
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Resource: Upgrading short-read animal genome assemblies to chromosome level using comparative genomics and a universal probe set
- Joana Damas,
- Rebecca O'Connor,
- Marta Farré,
- Vasileios Panagiotis E. Lenis,
- Henry J. Martell,
- Anjali Mandawala,
- Katie Fowler,
- Sunitha Joseph,
- Martin T. Swain,
- Darren K. Griffin,
- and Denis M. Larkin
Genome Res. May 2017 27: 875-884; Published in Advance November 30, 2016, doi:10.1101/gr.213660.116
...-level assemblies for animals Genome Research 877 www..org divergence times between 28 and 89 Myr revealed highly varying success rates (21%–94%), with hybridizations more likely to succeed on species closely related to that of the BAC origin (Table 2). To minimize the effect of evolutionary distances between...
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LETTER: Fast-X on the Z: Rapid evolution of sex-linked genes in birds
- Judith E. Mank,
- Erik Axelsson,
- and Hans Ellegren
Genome Res. May 2007 17: 618-624; Published in Advance April 6, 2007, doi:10.1101/gr.6031907
...and divergence in autosomal, Z-linked and W-linked introns of chicken and turkey . Mol. Biol. Evol. 21 : 1538 – 1547 . ↵ Axelsson, E. , Webster, M.T. , Smith, N.G.C. , Burt, D.W. , Ellegren, H. ( 2005 ) Comparison of the chicken and turkey s reveals a higher rate of nucleotide divergence on microchromosomes than...

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