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Research: Unexpectedly low recombination rates and presence of hotspots in termite genomes
- Turid Everitt,
- Tilman Rönneburg,
- Daniel Elsner,
- Anna Olsson,
- Yuanzhen Liu,
- Tuuli Larva,
- Judith Korb,
- and Matthew T. Webster
Genome Res. May 2025 35: 1124-1137; Published in Advance March 20, 2025, doi:10.1101/gr.279180.124
...in recombination landscapes among vertebrates and invertebrates. Vertebrate s are usually highly methylated with the exception of CpG islands. In vertebrate s that lack a functional PRDM9 gene, recombination events tend to localize to CpG islands (e.g., in dogs and birds) (Axelsson et al. 2012; Singhal et al. 2015...
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Resource: The fine-scale recombination rate variation and associations with genomic features in a butterfly
- Aleix Palahí i Torres,
- Lars Höök,
- Karin Näsvall,
- Daria Shipilina,
- Christer Wiklund,
- Roger Vila,
- Peter Pruisscher,
- and Niclas Backström
Genome Res. May 2023 33: 810-823; Published in Advance June 12, 2023, doi:10.1101/gr.277414.122
.... 2017). Furthermore, physical interference between multiple chiasmata may lead to regional differences in recombination rate (Gray and Cohen 2016; Peñalba and Wolf 2020). The zinc-finger protein encoded by the gene PRDM9 has been described as an important regulator of recombination in some species...
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Research: Histone methyltransferase PRDM9 is not essential for meiosis in male mice
- Ondrej Mihola,
- Florencia Pratto,
- Kevin Brick,
- Eliska Linhartova,
- Tatyana Kobets,
- Petr Flachs,
- Christopher L. Baker,
- Radislav Sedlacek,
- Kenneth Paigen,
- Petko M. Petkov,
- R. Daniel Camerini-Otero,
- and Zdenek Trachtulec
Genome Res. July 2019 29: 1078-1086; Published in Advance June 11, 2019, doi:10.1101/gr.244426.118
...immunofluorescent localization of MLH1 protein. Genetics 151: 1569–1579. ↵Axelsson E, Webster MT, Ratnakumar A, LUPA Consortium, Ponting CP, Lindblad-Toh K. 2012. Death of PRDM9 coincides with stabilization of the recombination landscape in the dog . Genome Res 22: 51–63. doi:10.1101/gr.124123.111 ↵Baker CL, Walker...
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Research: In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites
- Corinne Grey,
- Julie A.J. Clément,
- Jérôme Buard,
- Benjamin Leblanc,
- Ivo Gut,
- Marta Gut,
- Laurent Duret,
- and Bernard de Massy
Genome Res. April 2017 27: 580-590; Published in Advance March 23, 2017, doi:10.1101/gr.217240.116
...,Wang J, et al. 2013. Genetic recombination is targeted towards gene promoter regions in dogs. PLoS Genet 9: e1003984. Axelsson E,WebsterMT, Ratnakumar A, Ponting CP, Lindblad-Toh K. 2012. Death of PRDM9 coincides with stabilization of the recombination landscape in the dog . Genome Res 22: 51–63. Aymard...
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Erratum: Errata Genome Res. April 2012 22: 810

...22: 51–63 (2012) Death of PRDM9 coincides with stabilization of the recombination landscape in the dog Erik Axelsson, Matthew T. Webster, Abhirami Ratnakumar, The LUPA Consortium, Chris P. Ponting, and Kerstin Lindblad-Toh The authors have discovered an error in the formula to calculate GC*. In two...
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Research: Widespread cis-regulatory convergence between the extinct Tasmanian tiger and gray wolf
- Charles Y. Feigin,
- Axel H. Newton,
- and Andrew J. Pask
Genome Res. October 2019 29: 1648-1658; Published in Advance September 18, 2019, doi:10.1101/gr.244251.118
...humans however, up to 40% of recombination hotspots in the dog contain significant peaks in GC content. This distribution of GC peaks is thought to be driven in part by a canid-specific loss of the recombination-directing transcription factor PRDM9, the loss of which corresponds to a long-term trend...

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