Searching journal content for articles similar to Auton et al. 19 (5): 795.

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  1. Research: Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages
    • Tracy Jiaye Lee,
    • Yu-Ching Liu,
    • Wei-An Liu,
    • Yu-Fei Lin,
    • Hsin-Han Lee,
    • Huei-Mien Ke,
    • Jen-Pan Huang,
    • Mei-Yeh Jade Lu,
    • Chia-Lun Hsieh,
    • Kuo-Fang Chung,
    • Gianni Liti,
    • and Isheng Jason Tsai
    Genome Res. May 2022 32: 864-877; Published in Advance March 31, 2022, doi:10.1101/gr.276286.121
    ...the unoise2 (Edgar 2016b) algorithm. The taxonomy of zOTUs was classified using the SINTAX (Edgar 2016a) algorithm (Edgar 2016) against the UNITE (Nilsson et al. 2018) Fungal database (v. 8.2). Merged reads were assigned into zOTUs with 100% sequence identity and tabulated using the usearch_global function...
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  2. Research: Genotype imputation from low-coverage data for medical and population genetic analyses
    • Simone Andrea Biagini,
    • Sara Becelaere,
    • Mio Aerden,
    • Tatjana Jatsenko,
    • Laurens Hannes,
    • Philip Van Damme,
    • Jeroen Breckpot,
    • Koenraad Devriendt,
    • Bernard Thienpont,
    • Joris Robert Vermeesch,
    • Isabelle Cleynen,
    • and Toomas Kivisild
    Genome Res. September 2025 35: 1929-1941; Published in Advance July 22, 2025, doi:10.1101/gr.280175.124
    ...of the plot.View larger version: In this window In a new window Figure 5. Principal component analysis of imputed NIPS data in the context of regional and global reference populations. (A) The plot of PC1 and PC2. The smaller PCA plot highlights European and non-European ancestries. (B) UMAP plot of the first...
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  3. Research: Selection and explosive growth alter genetic architecture and hamper the detection of causal rare variants
    • Lawrence H. Uricchio,
    • Noah A. Zaitlen,
    • Chun Jimmie Ye,
    • John S. Witte,
    • and Ryan D. Hernandez
    Genome Res. July 2016 26: 863-873; Published in Advance May 18, 2016, doi:10.1101/gr.202440.115
    ...coefficients (s) across a broad range. In Figure 2, we show that for all models and populations considered, increasing the growth rate increases the proportion of the genetic variance that is driven by singletons, Vc/V1. This suggests that a population’s demographic history is a major determinant...
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  4. LETTER: The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)
    • Webb Miller,
    • Daniela I. Drautz,
    • Jan E. Janecka,
    • Arthur M. Lesk,
    • Aakrosh Ratan,
    • Lynn P. Tomsho,
    • Mike Packard,
    • Yeting Zhang,
    • Lindsay R. McClellan,
    • Ji Qi,
    • Fangqing Zhao,
    • M. Thomas P. Gilbert,
    • Love Dalén,
    • Juan Luis Arsuaga,
    • Per G.P. Ericson,
    • Daniel H. Huson,
    • Kristofer M. Helgen,
    • William J. Murphy,
    • Anders Götherström,
    • and Stephan C. Schuster
    Genome Res. February 2009 19: 213-220; Published in Advance January 12, 2009, doi:10.1101/gr.082628.108
    ..., together with an inventory of global museum holdings, will set the stage for coordinated and appropriate use of museum specimens to deepen our understanding of evolution and the extinction process. Methods Specimens Thylacine sample 1 was from USNM 125345, a taxidermically preserved adult male that died...
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  5. Research: A hot L1 retrotransposon evades somatic repression and initiates human colorectal cancer
    • Emma C. Scott,
    • Eugene J. Gardner,
    • Ashiq Masood,
    • Nelson T. Chuang,
    • Paula M. Vertino,
    • and Scott E. Devine
    Genome Res. June 2016 26: 745-755; Published in Advance May 10, 2016, doi:10.1101/gr.201814.115
    ...In a new window Figure 5. Population genetics of source elements in 26 diverse human populations. The 26 diverse human populations that were studied by the 1000 Genomes Project were examined to determine the frequencies of the Chr 17, Chr 14, and Chr 12 elements in global populations. The measurements...
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