Searching journal content for articles similar to Audano and Beck 34 (1): 7.

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  1. Review: Leveraging the power of long reads for targeted sequencing
    • Shruti V. Iyer,
    • Sara Goodwin,
    • and William Richard McCombie
    Genome Res. November 2024 34: 1701-1718; doi:10.1101/gr.279168.124
    ...advantages of long-read technologies is its ability to generate highly contiguous sequences of large genomic regions, including complex and repetitive regions that are difficult to resolve using short-read technologies. This is particularly useful for applications such as structural variant (SV) detection...
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  2. LETTER: A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications
    • Xinwei She,
    • Ge Liu,
    • Mario Ventura,
    • Shaying Zhao,
    • Doriana Misceo,
    • Roberta Roberto,
    • Maria Francesca Cardone,
    • Mariano Rocchi,
    • NISC Comparative Sequencing Program,
    • Eric D. Green,
    • Nicoletta Archidiacano,
    • and Evan E. Eichler
    Genome Res. May 2006 16: 576-583; Published in Advance April 10, 2006, doi:10.1101/gr.4949406
    ...that structural variation has been shown to be significantly enriched within regions of recent segmental duplication ( Iafrate et al. 2004 ; Sharp et al. 2005 ; Tuzun et al. 2005 ). It has been estimated that ∼20% of segmental duplications are polymorphic within the human and chimpanzee populations ( Cheng et al...
  3. Resource: A physical and genetic map of Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci
    • Kaitlin U. Laverty,
    • Jake M. Stout,
    • Mitchell J. Sullivan,
    • Hardik Shah,
    • Navdeep Gill,
    • Larry Holbrook,
    • Gintaras Deikus,
    • Robert Sebra,
    • Timothy R. Hughes,
    • Jonathan E. Page,
    • and Harm van Bakel
    Genome Res. January 2019 29: 146-156; Published in Advance November 8, 2018, doi:10.1101/gr.242594.118
    ...metabolism. Due to the relatively high rate of polymorphism in cannabis, it should be possible to employ resequencing (e.g., low-coverage short-read Illumina protocols) either on crosses or at a population level to associate variants or variation with traits and genes, using the genetic map...
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  4. Research: Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division
    • Alexej Abyzov,
    • Rebecca Iskow,
    • Omer Gokcumen,
    • David W. Radke,
    • Suganthi Balasubramanian,
    • Baikang Pei,
    • Lukas Habegger,
    • The 1000 Genomes Project Consortium,
    • Charles Lee,
    • and Mark Gerstein
    Genome Res. December 2013 23: 2042-2052; Published in Advance September 11, 2013, doi:10.1101/gr.154625.113
    ...(i.e., those not present in the reference genome), to find their insertion points, and to genotype them. Using these methods, we catalogued and analyzed 174 retroduplication variants in almost one thousand humans, which were sequenced as part of Phase 1 of The 1000 Genomes Project Consortium...
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