Searching journal content for articles similar to Ashford et al. 36 (3): 561.

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  1. Research: Conserved noncoding sequences provide insights into regulatory sequence and loss of gene expression in maize
    • Baoxing Song,
    • Edward S. Buckler,
    • Hai Wang,
    • Yaoyao Wu,
    • Evan Rees,
    • Elizabeth A. Kellogg,
    • Daniel J. Gates,
    • Merritt Khaipho-Burch,
    • Peter J. Bradbury,
    • Jeffrey Ross-Ibarra,
    • Matthew B. Hufford,
    • and M. Cinta Romay
    Genome Res. July 2021 31: 1245-1257; Published in Advance May 27, 2021, doi:10.1101/gr.266528.120
    ...diversification of duplicated genes in the context of maize subs. Our results provide a quantitative understanding of the molecular processes governing the evolution of CNSs in maize.The s of a million eukaryote species will likely be sequenced within the next decade (Lewin et al. 2018), but understanding how...
  2. Research: Recruitment of histone modifications to assist mRNA dosage maintenance after degeneration of cytosine DNA methylation during animal evolution
    • Andrew Ying-Fei Chang and
    • Ben-Yang Liao
    Genome Res. September 2017 27: 1513-1524; Published in Advance July 18, 2017, doi:10.1101/gr.221739.117
    ...that maintenance of mRNA levels in cells is very important during the evolution of animal s and transcriptomes. In addition to expression reduction model, previously proposed models of duplicate gene retention include neofunctionalization and subfunctionalization (Force et al. 1999). To determine whichmodel...
  3. ARTICLE: Functional Divergence of Two Zebrafish Midkine Growth Factors Following Fish-Specific Gene Duplication
    • Christoph Winkler,
    • Matthias Schäfer,
    • Jutta Duschl,
    • Manfred Schartl,
    • and Jean-Nicolas Volff
    Genome Res. June 2003 13: 1067-1081; Published in Advance May 12, 2003, doi:10.1101/gr.1097503
    ...ortholog mdk is located. At least four other genes unique in mammals are also present as duplicates on LG7 and LG25. Phylogenetic and divergence analyses suggested that LG7/LG25 paralogs including mdka and mdkb have been formed at approximately the same time, early during the evolution of the fish lineage...
  4. LETTER: Divergence of Spatial Gene Expression Profiles Following Species-Specific Gene Duplications in Human and Mouse
    • Lukasz Huminiecki and
    • Kenneth H. Wolfe
    Genome Res. October 2004 14: 1870-1879; doi:10.1101/gr.2705204
    ...particular gene families where species-specific duplications have occurred indicated several examples of apparent neofunctionalization of duplicated genes, but only one case of subfunctionalization. Often, the expression of both copies of a duplicated gene appears to have changed relative to the ancestral...
  5. Research: Ancient exapted transposable elements promote nuclear enrichment of human long noncoding RNAs
    • Joana Carlevaro-Fita,
    • Taisia Polidori,
    • Monalisa Das,
    • Carmen Navarro,
    • Tatjana I. Zoller,
    • and Rory Johnson
    Genome Res. February 2019 29: 208-222; Published in Advance December 26, 2018, doi:10.1101/gr.229922.117
    ...a key step toward the understanding and prediction of lncRNA functions.One possible source of lncRNA domains are transposable elements (TEs) (Johnson and Guigó 2014). TEs are known to have been major contributors to genomic evolution through the insertion and neofunctionalization of sequence fragments...
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