Searching journal content for articles similar to Arthur et al. 24 (7): 1115.

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  1. Research: Synergistic regulation by H3K36 and H3K27 methylation defines the chromatin landscape to control virulence and secondary metabolism in a fungal pathogen
    • Xingmin Han,
    • Chenghui Xu,
    • Yiyi Ren,
    • Meiling Guo,
    • Jiayue Yan,
    • Xuan Wang,
    • Chao Liu,
    • Qin Gu,
    • Xing-Xing Shen,
    • Zhonghua Ma,
    • and Yun Chen
    Genome Res. November 2025 35: 2472-2487; Published in Advance October 14, 2025, doi:10.1101/gr.280560.125
    ...distribution in PH-1 and Δash1 around H3K27me3-marked genes (±2.0 kb). (D) Venn diagrams of overlap between H3K27me3-marked genes and Ash1-dependent H3K36me3-marked genes. (E) GO enrichment analysis of overlapping genes from D (n = 1092). (F,G) Heat maps of loci with increased (F) or decreased (G) H3K27me3...
  2. Research: Recruitment of histone modifications to assist mRNA dosage maintenance after degeneration of cytosine DNA methylation during animal evolution
    • Andrew Ying-Fei Chang and
    • Ben-Yang Liao
    Genome Res. September 2017 27: 1513-1524; Published in Advance July 18, 2017, doi:10.1101/gr.221739.117
    ..., of duplicated gene expression according to the histone modifications present, we examined -wide patterns of histone modifications in our animal models. Histone modification data can be obtained with chromatin immunoprecipitation combined with DNA microarray analysis (ChIP-chip) (e.g., Bernstein et al. 2005...
  3. Research: Genomic regulatory landscape underlying the antiviral response of Atlantic salmon
    • Shahmir Naseer,
    • Thomas C Clark,
    • Bertrand Collet,
    • Pooran Dewari,
    • Damir Baranasic,
    • Daniel J Macqueen,
    • Pierre Boudinot,
    • and Samuel A.M. Martin
    Genome Res. October 22, 2025 gr.280579.125; Published in Advance October 22, 2025, doi:10.1101/gr.280579.125
    ...Chromatin immunoprecipitation profiling of H3K27ac and H3K27me3 marks further revealed 168 distinct patterns of histone modification following immune stimulation. Stimulated fish 169 showed an average of 72,490 (±21,211) H3K27ac and 68,873 (±16,608) H3K27me3 peaks, 170 compared to 78,816 (±31,106) and 48...
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  4. Research: Developmental timing of programmed DNA elimination in Paramecium tetraurelia recapitulates germline transposon evolutionary dynamics
    • Coralie Zangarelli,
    • Olivier Arnaiz,
    • Mickaël Bourge,
    • Kevin Gorrichon,
    • Yan Jaszczyszyn,
    • Nathalie Mathy,
    • Loïc Escoriza,
    • Mireille Bétermier,
    • and Vinciane Régnier
    Genome Res. November/December 2022 32: 2028-2042; Published in Advance November 23, 2022, doi:10.1101/gr.277027.122
    ...known factors involved in the epigenetic control of IES excision (Fig. 4E,F; Supplemental Fig. S11). We found an underrepresentation of the very early excised cluster among the subset of IESs whose excision depends on the deposition of H3K9me3 and H3K27me3 marks (i.e., IESs retained in an EZL1 KD...
  5. Research: Distal regulation, silencers, and a shared combinatorial syntax are hallmarks of animal embryogenesis
    • Paola Cornejo-Páramo,
    • Kathrein Roper,
    • Sandie M. Degnan,
    • Bernard M. Degnan,
    • and Emily S. Wong
    Genome Res. March 2022 32: 474-487; Published in Advance January 19, 2022, doi:10.1101/gr.275864.121
    ...and genes proximal to these regions. On the other hand, the repressive polycomb-mediated H3K27me3 mark, also profiled in adults, was enriched at negatively correlated peaks, consistent with H3K27me3 regions marking silencers (Fig. 2D; Cai et al. 2021). Linking this corroborating information to developmental...
  6. Research: Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia
    • Stephen N. Sansom,
    • Noriko Shikama-Dorn,
    • Saule Zhanybekova,
    • Gretel Nusspaumer,
    • Iain C. Macaulay,
    • Mary E. Deadman,
    • Andreas Heger,
    • Chris P. Ponting,
    • and Georg A. Holländer
    Genome Res. December 2014 24: 1918-1931; Published in Advance September 15, 2014, doi:10.1101/gr.171645.113
    ...by the observation that genes induced by Aire expression are generally characterized by a repressive chromatin state in somatic tissues, we found these genes to be strongly associated with H3K27me3 marks in mTEC. Our findings are consistent with AIRE targeting and inducing the promiscuous expression of genes...
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  7. Research: Interplay of TRIM28 and DNA methylation in controlling human endogenous retroelements
    • Priscilla Turelli,
    • Nathaly Castro-Diaz,
    • Flavia Marzetta,
    • Adamandia Kapopoulou,
    • Charlène Raclot,
    • Julien Duc,
    • Vannary Tieng,
    • Simon Quenneville,
    • and Didier Trono
    Genome Res. August 2014 24: 1260-1270; Published in Advance May 30, 2014, doi:10.1101/gr.172833.114
    ...ac, and bore the combination of active H3K4me3 and repressive H3K27me3 marks typical of bivalent promoters, and no H3K36me3 over their gene body. Interdependence between TRIM28 ERE recruitment and DNA methylation In murine ES cells, TRIM28-induced repression leads to DNA methylation, which is thought...
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