Searching journal content for articles similar to Ansari-Lari et al. 8 (1): 29.

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  1. Research: Chromosome-scale assemblies of Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection–related chromatin reorganization
    • Cyril Matthey-Doret,
    • Morgan J. Colp,
    • Pedro Escoll,
    • Agnès Thierry,
    • Pierrick Moreau,
    • Bruce Curtis,
    • Tobias Sahr,
    • Matt Sarrasin,
    • Michael W. Gray,
    • B. Franz Lang,
    • John M. Archibald,
    • Carmen Buchrieser,
    • and Romain Koszul
    Genome Res. September 2022 32: 1698-1710; Published in Advance September 15, 2022, doi:10.1101/gr.276375.121
    ...could not be resolved correctly with the data available to us. However, for both strains, the -wide contact maps reveal a grid-like pattern, with contact enrichment between chromosome extremities resulting in discrete dots. These contacts can be interpreted as a clustering of the telomeres...
  2. Resource: High-quality assembly of the Chinese white truffle genome and recalibrated divergence time estimate provide insight into the evolutionary dynamics of Tuberaceae
    • Jacopo Martelossi,
    • Jacopo Vujovic,
    • Yue Huang,
    • Alessia Tatti,
    • Kaiwei Xu,
    • Federico Puliga,
    • Yuanxue Chen,
    • Omar Rota Stabelli,
    • Fabrizio Ghiselli,
    • Xiaoping Zhang,
    • and Alessandra Zambonelli
    Genome Res. November 2025 35: 2601-2616; Published in Advance August 21, 2025, doi:10.1101/gr.280368.124
    ...architecture, with stretches of heterochromatic DNA dominated by long retrotransposon insertions interspersed with compact, gene-rich regions. The absence of an enrichment of SSPs within TE-rich regions suggest a partially different genomic organization compared with the frequent TE...
  3. LETTER: Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions
    • Laurie Gordon,
    • Shan Yang,
    • Mary Tran-Gyamfi,
    • Dan Baggott,
    • Mari Christensen,
    • Aaron Hamilton,
    • Richard Crooijmans,
    • Martien Groenen,
    • Susan Lucas,
    • Ivan Ovcharenko,
    • and Lisa Stubbs
    Genome Res. November 2007 17: 1603-1613; Published in Advance October 5, 2007, doi:10.1101/gr.6775107
    ...Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions Laurie Gordon 1 , 2 , 5 , Shan Yang 1 , 5 , Mary Tran-Gyamfi 1 , 2 , Dan Baggott 1 , Mari Christensen 1 , 2...
  4. Research: De novo genome assemblies of two cryptodiran turtles with ZZ/ZW and XX/XY sex chromosomes provide insights into patterns of genome reshuffling and uncover novel 3D genome folding in amniotes
    • Basanta Bista,
    • Laura González-Rodelas,
    • Lucía Álvarez-González,
    • Zhi-qiang Wu,
    • Eugenia E. Montiel,
    • Ling Sze Lee,
    • Daleen B. Badenhorst,
    • Srihari Radhakrishnan,
    • Robert Literman,
    • Beatriz Navarro-Dominguez,
    • John B. Iverson,
    • Simon Orozco-Arias,
    • Josefa González,
    • Aurora Ruiz-Herrera,
    • and Nicole Valenzuela
    Genome Res. October 2024 34: 1553-1569; Published in Advance October 16, 2024, doi:10.1101/gr.279443.124
    ...modes of dosage compensation (Montiel et al. 2022) that differ from the dosage compensation affecting the rest of the Z in Apalone (Bista et al. 2021).Nonrandom density of genes and GC content by chromosome sizeWe also observed that Apalone and Staurotypus microchromosomes are GC-rich and gene-rich...
    OPEN ACCESS ARTICLE
  5. Research: Fusion, fission, and scrambling of the bilaterian genome in Bryozoa
    • Thomas D. Lewin,
    • Isabel Jiah-Yih Liao,
    • Mu-En Chen,
    • John D.D. Bishop,
    • Peter W.H. Holland,
    • and Yi-Jyun Luo
    Genome Res. January 2025 35: 78-92; Published in Advance January 6, 2025, doi:10.1101/gr.279636.124
    ...that rearrangements led to the dispersion of genes from bryozoan Hox clusters onto multiple chromosomes. Our findings demonstrate that the canonical bilaterian structure has been lost across all studied representatives of an entire phylum, and reveal that linkage group fission can occur very frequently in specific...
    OPEN ACCESS ARTICLE
  6. LETTER: Organization and Evolution of a Gene-Rich Region of the Mouse Genome: A 12.7-Mb Region Deleted in the Del(13)Svea36H Mouse
    • Ann-Marie Mallon,
    • Laurens Wilming,
    • Joseph Weekes,
    • James G.R. Gilbert,
    • Jennifer Ashurst,
    • Sandrine Peyrefitte,
    • Lucy Matthews,
    • Matthew Cadman,
    • Richard McKeone,
    • Chris A. Sellick,
    • Ruth Arkell,
    • Marc R.M. Botcherby,
    • Mark A. Strivens,
    • R. Duncan Campbell,
    • Simon Gregory,
    • Paul Denny,
    • John M. Hancock,
    • Jane Rogers,
    • and Steve D.M. Brown
    Genome Res. October 2004 14: 1888-1901; Published in Advance September 13, 2004, doi:10.1101/gr.2478604
    ...Organization and Evolution of a Gene-Rich Region of the Mouse Genome: A 12.7-Mb Region Deleted in the Del(13) Svea 36H Mouse Ann-Marie Mallon 1 , 4 , Laurens Wilming 2 , 4 , Joseph Weekes 1 , James G.R. Gilbert 2 , Jennifer Ashurst 2...
  7. LETTER: Chicken Microchromosomes Are Hyperacetylated, Early Replicating, and Gene Rich
    • Heather A. McQueen,
    • Giorgia Siriaco,
    • and Adrian P. Bird
    Genome Res. June 1, 1998 8: 621-630; doi:10.1101/gr.8.6.621
    ...of the amino-terminus of histone H4 is observed in transcriptionally active regions (for review, see Turner 1993 ; Wade et al. 1997 ). For example, the distribution of acetylated H4 in human and hamster chromosomes has been shown to be nonrandom, with hyperacetylation of gene-rich R bands ( Jeppesen et al...
  8. ARTICLE: Genes in a Refined Smith-Magenis Syndrome Critical Deletion Interval on Chromosome 17p11.2 and the Syntenic Region of the Mouse
    • Weimin Bi,
    • Jiong Yan,
    • Paweł Stankiewicz,
    • Sung-Sup Park,
    • Katherina Walz,
    • Cornelius F. Boerkoel,
    • Lorraine Potocki,
    • Lisa G. Shaffer,
    • Koen Devriendt,
    • Małgorzata J.M. Nowaczyk,
    • Ken Inoue,
    • and James R. Lupski
    Genome Res. May 1, 2002 12: 713-728; doi:10.1101/gr.73702
    ...regions can contain a high gene density. The number, order, and orientation of all 17 genes in a gene-rich cluster at human 12p13 are conserved between humans and mice ( Ansari-Lari et al. 1998 ). Conservation between these two species was also shown for the distal 700 kb of the Cat eye syndrome...
  9. LETTER: The Human Homolog of a Mouse-Imprinted Gene, Peg3, Maps to a Zinc Finger Gene-Rich Region of Human Chromosome 19q13.4
    • Joomyeong Kim,
    • Linda Ashworth,
    • Elbert Branscomb,
    • and Lisa Stubbs
    Genome Res. May 1, 1997 7: 532-540; doi:10.1101/gr.7.5.532
    ...The Human Homolog of a Mouse-Imprinted Gene, Peg3, Maps to a Zinc Finger Gene-Rich Region of Human Chromosome 19q13.4 Joomyeong Kim 1 , Linda Ashworth 2 , Elbert Branscomb 2 , and Lisa Stubbs 1 , 3 1Biology Division, Oak Ridge...
  10. ARTICLES: Long-range map of a 3.5-Mb region in Xp11.23-22 with a sequence-ready map from a 1.1-Mb gene-rich interval.
    • D Schindelhauer,
    • H Hellebrand,
    • L Grimm,
    • I Bader,
    • T Meitinger,
    • M Wehnert,
    • M Ross,
    • and A Meindl
    Genome Res. November 1996 6: 1056-1069; doi:10.1101/gr.6.11.1056
    ...to the X chromosome. Proc. Natl. Acad. Sci. 87 : 668 – 672 . RESEARCH Long-range Map of a 3.5-Mb Region in Xp11.23-22 with a Sequence-ready Map from a 1.1-Mb Gene-rich Interval Dirk Schindelhauer, 1'4's Heide Hellebrand, 1'4 Lena Grimm, 1 Ingrid Bader, ~ Thomas Meitinger, ~ Manfred Wehnert, 2 Mark Ross, 3...
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