Searching journal content for articles similar to Aganezov and Raphael 30 (9): 1274.

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  1. Perspective: Unraveling the hidden complexity of cancer through long-read sequencing
    • Qiuhui Li,
    • Ayse G. Keskus,
    • Justin Wagner,
    • Michal B. Izydorczyk,
    • Winston Timp,
    • Fritz J. Sedlazeck,
    • Alison P. Klein,
    • Justin M. Zook,
    • Mikhail Kolmogorov,
    • and Michael C. Schatz
    Genome Res. April 2025 35: 599-620; Published in Advance March 20, 2025, doi:10.1101/gr.280041.124
    ...are impacted (Zheng et al. 2024a). In addition, long-read phasing and methylation information can be used to distinguish the tumor clones and haplotypes (Ermini and Driguez 2024; Fu et al. 2024; Simpson 2024). A few methods for multiallelic phasing exist, such as WhatsHap for polyploid phasing (Schrinner et al...
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  2. Research: Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing
    • Sergey Aganezov,
    • Sara Goodwin,
    • Rachel M. Sherman,
    • Fritz J. Sedlazeck,
    • Gayatri Arun,
    • Sonam Bhatia,
    • Isac Lee,
    • Melanie Kirsche,
    • Robert Wappel,
    • Melissa Kramer,
    • Karen Kostroff,
    • David L. Spector,
    • Winston Timp,
    • W. Richard McCombie,
    • and Michael C. Schatz
    Genome Res. September 2020 30: 1258-1273; Published in Advance September 4, 2020, doi:10.1101/gr.260497.119
    ...patient samples are often heterogeneous and consist of multiple cancer clones with possibly distinct karyotypes (Gundem et al. 2015; Zaccaria and Raphael 2018). For such samples, long reads can provide valuable insight in assigning groups of SVs to particular clones, and future long-read powered cancer...
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