Searching journal content for Ziv Bar-Joseph in author.

Displaying results 1-7 of 7
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  1. Method: A unified analysis of atlas single-cell data
    • Hao Chen,
    • Nam D. Nguyen,
    • Matthew Ruffalo,
    • and Ziv Bar-Joseph
    Genome Res. May 2025 35: 1219-1233; Published in Advance February 18, 2025, doi:10.1101/gr.279631.124
    OPEN ACCESS ARTICLE
  2. Method: Detecting m6A RNA modification from nanopore sequencing using a semisupervised learning framework
    • Haotian Teng,
    • Marcus Stoiber,
    • Ziv Bar-Joseph,
    • and Carl Kingsford
    Genome Res. November 2024 34: 1987-1999; Published in Advance October 15, 2024, doi:10.1101/gr.278960.124
    OPEN ACCESS ARTICLE
  3. Method: CodonBERT large language model for mRNA vaccines
    • Sizhen Li,
    • Saeed Moayedpour,
    • Ruijiang Li,
    • Michael Bailey,
    • Saleh Riahi,
    • Lorenzo Kogler-Anele,
    • Milad Miladi,
    • Jacob Miner,
    • Fabien Pertuy,
    • Dinghai Zheng,
    • Jun Wang,
    • Akshay Balsubramani,
    • Khang Tran,
    • Minnie Zacharia,
    • Monica Wu,
    • Xiaobo Gu,
    • Ryan Clinton,
    • Carla Asquith,
    • Joseph Skaleski,
    • Lianne Boeglin,
    • Sudha Chivukula,
    • Anusha Dias,
    • Tod Strugnell,
    • Fernando Ulloa Montoya,
    • Vikram Agarwal,
    • Ziv Bar-Joseph,
    • and Sven Jager
    Genome Res. July 2024 34: 1027-1035; Published in Advance July 1, 2024, doi:10.1101/gr.278870.123
  4. RECOMB 2022 Special/Methods: Unsupervised cell functional annotation for single-cell RNA-seq
    • Dongshunyi Li,
    • Jun Ding,
    • and Ziv Bar-Joseph
    Genome Res. September 2022 32: 1765-1775; Published in Advance June 28, 2022, doi:10.1101/gr.276609.122
  5. Method: Reconstructing differentiation networks and their regulation from time series single-cell expression data
    • Jun Ding,
    • Bruce J. Aronow,
    • Naftali Kaminski,
    • Joseph Kitzmiller,
    • Jeffrey A. Whitsett,
    • and Ziv Bar-Joseph
    Genome Res. March 2018 28: 383-395; Published in Advance January 9, 2018, doi:10.1101/gr.225979.117
  6. Method: Linking the signaling cascades and dynamic regulatory networks controlling stress responses
    • Anthony Gitter,
    • Miri Carmi,
    • Naama Barkai,
    • and Ziv Bar-Joseph
    Genome Res. February 2013 23: 365-376; Published in Advance October 11, 2012, doi:10.1101/gr.138628.112
  7. Method: Integrating multiple evidence sources to predict transcription factor binding in the human genome
    • Jason Ernst,
    • Heather L. Plasterer,
    • Itamar Simon,
    • and Ziv Bar-Joseph
    Genome Res. April 2010 20: 526-536; Published in Advance March 10, 2010, doi:10.1101/gr.096305.109
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