Searching journal content for Zhiping Weng in author.

Displaying results 1-10 of 14
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  1. Resource: Integration of high-resolution promoter profiling assays reveals novel, cell type–specific transcription start sites across 115 human cell and tissue types
    • Jill E. Moore,
    • Xiao-Ou Zhang,
    • Shaimae I. Elhajjajy,
    • Kaili Fan,
    • Henry E. Pratt,
    • Fairlie Reese,
    • Ali Mortazavi,
    • and Zhiping Weng
    Genome Res. February 2022 32: 389-402; Published in Advance December 23, 2021, doi:10.1101/gr.275723.121
  2. Research: Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function
    • Xiao-Ou Zhang,
    • Thomas R. Gingeras,
    • and Zhiping Weng
    Genome Res. September 2019 29: 1402-1414; Published in Advance August 14, 2019, doi:10.1101/gr.249789.119
  3. Research: Exploring the DNA-recognition potential of homeodomains
    • Stephanie W. Chu,
    • Marcus B. Noyes,
    • Ryan G. Christensen,
    • Brian G. Pierce,
    • Lihua J. Zhu,
    • Zhiping Weng,
    • Gary D. Stormo,
    • and Scot A. Wolfe
    Genome Res. October 2012 22: 1889-1898; Published in Advance April 26, 2012, doi:10.1101/gr.139014.112
  4. Research: Understanding transcriptional regulation by integrative analysis of transcription factor binding data
    • Chao Cheng,
    • Roger Alexander,
    • Renqiang Min,
    • Jing Leng,
    • Kevin Y. Yip,
    • Joel Rozowsky,
    • Koon-Kiu Yan,
    • Xianjun Dong,
    • Sarah Djebali,
    • Yijun Ruan,
    • Carrie A. Davis,
    • Piero Carninci,
    • Timo Lassman,
    • Thomas R. Gingeras,
    • Roderic Guigó,
    • Ewan Birney,
    • Zhiping Weng,
    • Michael Snyder,
    • and Mark Gerstein
    Genome Res. September 2012 22: 1658-1667; doi:10.1101/gr.136838.111
    OPEN ACCESS ARTICLE
  5. Resource: Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
    • Jie Wang,
    • Jiali Zhuang,
    • Sowmya Iyer,
    • XinYing Lin,
    • Troy W. Whitfield,
    • Melissa C. Greven,
    • Brian G. Pierce,
    • Xianjun Dong,
    • Anshul Kundaje,
    • Yong Cheng,
    • Oliver J. Rando,
    • Ewan Birney,
    • Richard M. Myers,
    • William S. Noble,
    • Michael Snyder,
    • and Zhiping Weng
    Genome Res. September 2012 22: 1798-1812; doi:10.1101/gr.139105.112
    OPEN ACCESS ARTICLE
  6. Research: Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    • Eugene Berezikov,
    • Nicolas Robine,
    • Anastasia Samsonova,
    • Jakub O. Westholm,
    • Ammar Naqvi,
    • Jui-Hung Hung,
    • Katsutomo Okamura,
    • Qi Dai,
    • Diane Bortolamiol-Becet,
    • Raquel Martin,
    • Yongjun Zhao,
    • Phillip D. Zamore,
    • Gregory J. Hannon,
    • Marco A. Marra,
    • Zhiping Weng,
    • Norbert Perrimon,
    • and Eric C. Lai
    Genome Res. February 2011 21: 203-215; Published in Advance December 22, 2010, doi:10.1101/gr.116657.110
    OPEN ACCESS ARTICLE
  7. Research: Sequence features that drive human promoter function and tissue specificity
    • Jane M. Landolin,
    • David S. Johnson,
    • Nathan D. Trinklein,
    • Shelly F. Aldred,
    • Catherine Medina,
    • Hennady Shulha,
    • Zhiping Weng,
    • and Richard M. Myers
    Genome Res. July 2010 20: 890-898; Published in Advance May 25, 2010, doi:10.1101/gr.100370.109
  8. LETTER: Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    • David S. Johnson,
    • Wei Li,
    • D. Benjamin Gordon,
    • Arindam Bhattacharjee,
    • Bo Curry,
    • Jayati Ghosh,
    • Leonardo Brizuela,
    • Jason S. Carroll,
    • Myles Brown,
    • Paul Flicek,
    • Christoph M. Koch,
    • Ian Dunham,
    • Mark Bieda,
    • Xiaoqin Xu,
    • Peggy J. Farnham,
    • Philipp Kapranov,
    • David A. Nix,
    • Thomas R. Gingeras,
    • Xinmin Zhang,
    • Heather Holster,
    • Nan Jiang,
    • Roland D. Green,
    • Jun S. Song,
    • Scott A. McCuine,
    • Elizabeth Anton,
    • Loan Nguyen,
    • Nathan D. Trinklein,
    • Zhen Ye,
    • Keith Ching,
    • David Hawkins,
    • Bing Ren,
    • Peter C. Scacheri,
    • Joel Rozowsky,
    • Alexander Karpikov,
    • Ghia Euskirchen,
    • Sherman Weissman,
    • Mark Gerstein,
    • Michael Snyder,
    • Annie Yang,
    • Zarmik Moqtaderi,
    • Heather Hirsch,
    • Hennady P. Shulha,
    • Yutao Fu,
    • Zhiping Weng,
    • Kevin Struhl,
    • Richard M. Myers,
    • Jason D. Lieb,
    • and X. Shirley Liu
    Genome Res. March 2008 18: 393-403; Published in Advance February 7, 2008, doi:10.1101/gr.7080508
  9. LETTER: Nucleosome positioning signals in genomic DNA
    • Heather E. Peckham,
    • Robert E. Thurman,
    • Yutao Fu,
    • John A. Stamatoyannopoulos,
    • William Stafford Noble,
    • Kevin Struhl,
    • and Zhiping Weng
    Genome Res. August 2007 17: 1170-1177; Published in Advance July 9, 2007, doi:10.1101/gr.6101007
  10. LETTER: Transcription factor binding and modified histones in human bidirectional promoters
    • Jane M. Lin,
    • Patrick J. Collins,
    • Nathan D. Trinklein,
    • Yutao Fu,
    • Hualin Xi,
    • Richard M. Myers,
    • and Zhiping Weng
    Genome Res. June 2007 17: 818-827; doi:10.1101/gr.5623407
    OPEN ACCESS ARTICLE
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