Searching journal content for Z Weng in author.

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  1. Resource: Integration of high-resolution promoter profiling assays reveals novel, cell type–specific transcription start sites across 115 human cell and tissue types
    • Jill E. Moore,
    • Xiao-Ou Zhang,
    • Shaimae I. Elhajjajy,
    • Kaili Fan,
    • Henry E. Pratt,
    • Fairlie Reese,
    • Ali Mortazavi,
    • and Zhiping Weng
    Genome Res. February 2022 32: 389-402; Published in Advance December 23, 2021, doi:10.1101/gr.275723.121
  2. Research: Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function
    • Xiao-Ou Zhang,
    • Thomas R. Gingeras,
    • and Zhiping Weng
    Genome Res. September 2019 29: 1402-1414; Published in Advance August 14, 2019, doi:10.1101/gr.249789.119
  3. Method: Read clouds uncover variation in complex regions of the human genome
    • Alex Bishara,
    • Yuling Liu,
    • Ziming Weng,
    • Dorna Kashef-Haghighi,
    • Daniel E. Newburger,
    • Robert West,
    • Arend Sidow,
    • and Serafim Batzoglou
    Genome Res. October 2015 25: 1570-1580; Published in Advance August 18, 2015, doi:10.1101/gr.191189.115
    OPEN ACCESS ARTICLE
  4. Method: Discovery of recurrent structural variants in nasopharyngeal carcinoma
    • Anton Valouev,
    • Ziming Weng,
    • Robert T. Sweeney,
    • Sushama Varma,
    • Quynh-Thu Le,
    • Christina Kong,
    • Arend Sidow,
    • and Robert B. West
    Genome Res. February 2014 24: 300-309; Published in Advance November 8, 2013, doi:10.1101/gr.156224.113
  5. Research: Genome evolution during progression to breast cancer
    • Daniel E. Newburger,
    • Dorna Kashef-Haghighi,
    • Ziming Weng,
    • Raheleh Salari,
    • Robert T. Sweeney,
    • Alayne L. Brunner,
    • Shirley X. Zhu,
    • Xiangqian Guo,
    • Sushama Varma,
    • Megan L. Troxell,
    • Robert B. West,
    • Serafim Batzoglou,
    • and Arend Sidow
    Genome Res. July 2013 23: 1097-1108; Published in Advance April 8, 2013, doi:10.1101/gr.151670.112
  6. Research: Exploring the DNA-recognition potential of homeodomains
    • Stephanie W. Chu,
    • Marcus B. Noyes,
    • Ryan G. Christensen,
    • Brian G. Pierce,
    • Lihua J. Zhu,
    • Zhiping Weng,
    • Gary D. Stormo,
    • and Scot A. Wolfe
    Genome Res. October 2012 22: 1889-1898; Published in Advance April 26, 2012, doi:10.1101/gr.139014.112
  7. Research: Understanding transcriptional regulation by integrative analysis of transcription factor binding data
    • Chao Cheng,
    • Roger Alexander,
    • Renqiang Min,
    • Jing Leng,
    • Kevin Y. Yip,
    • Joel Rozowsky,
    • Koon-Kiu Yan,
    • Xianjun Dong,
    • Sarah Djebali,
    • Yijun Ruan,
    • Carrie A. Davis,
    • Piero Carninci,
    • Timo Lassman,
    • Thomas R. Gingeras,
    • Roderic Guigó,
    • Ewan Birney,
    • Zhiping Weng,
    • Michael Snyder,
    • and Mark Gerstein
    Genome Res. September 2012 22: 1658-1667; doi:10.1101/gr.136838.111
    OPEN ACCESS ARTICLE
  8. Resource: Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
    • Jie Wang,
    • Jiali Zhuang,
    • Sowmya Iyer,
    • XinYing Lin,
    • Troy W. Whitfield,
    • Melissa C. Greven,
    • Brian G. Pierce,
    • Xianjun Dong,
    • Anshul Kundaje,
    • Yong Cheng,
    • Oliver J. Rando,
    • Ewan Birney,
    • Richard M. Myers,
    • William S. Noble,
    • Michael Snyder,
    • and Zhiping Weng
    Genome Res. September 2012 22: 1798-1812; doi:10.1101/gr.139105.112
    OPEN ACCESS ARTICLE
  9. Research: Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    • Eugene Berezikov,
    • Nicolas Robine,
    • Anastasia Samsonova,
    • Jakub O. Westholm,
    • Ammar Naqvi,
    • Jui-Hung Hung,
    • Katsutomo Okamura,
    • Qi Dai,
    • Diane Bortolamiol-Becet,
    • Raquel Martin,
    • Yongjun Zhao,
    • Phillip D. Zamore,
    • Gregory J. Hannon,
    • Marco A. Marra,
    • Zhiping Weng,
    • Norbert Perrimon,
    • and Eric C. Lai
    Genome Res. February 2011 21: 203-215; Published in Advance December 22, 2010, doi:10.1101/gr.116657.110
    OPEN ACCESS ARTICLE
  10. Research: Sequence features that drive human promoter function and tissue specificity
    • Jane M. Landolin,
    • David S. Johnson,
    • Nathan D. Trinklein,
    • Shelly F. Aldred,
    • Catherine Medina,
    • Hennady Shulha,
    • Zhiping Weng,
    • and Richard M. Myers
    Genome Res. July 2010 20: 890-898; Published in Advance May 25, 2010, doi:10.1101/gr.100370.109
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