Searching journal content for Yutao Fu in author.

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  1. Method: Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns
    • John R. Edwards,
    • Anne H. O'Donnell,
    • Robert A. Rollins,
    • Heather E. Peckham,
    • Clarence Lee,
    • Maria H. Milekic,
    • Benjamin Chanrion,
    • Yutao Fu,
    • Tao Su,
    • Hanina Hibshoosh,
    • Jay A. Gingrich,
    • Fatemeh Haghighi,
    • Robert Nutter,
    • and Timothy H. Bestor
    Genome Res. July 2010 20: 972-980; Published in Advance May 20, 2010, doi:10.1101/gr.101535.109
  2. Methods: Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
    • Kevin Judd McKernan,
    • Heather E. Peckham,
    • Gina L. Costa,
    • Stephen F. McLaughlin,
    • Yutao Fu,
    • Eric F. Tsung,
    • Christopher R. Clouser,
    • Cisyla Duncan,
    • Jeffrey K. Ichikawa,
    • Clarence C. Lee,
    • Zheng Zhang,
    • Swati S. Ranade,
    • Eileen T. Dimalanta,
    • Fiona C. Hyland,
    • Tanya D. Sokolsky,
    • Lei Zhang,
    • Andrew Sheridan,
    • Haoning Fu,
    • Cynthia L. Hendrickson,
    • Bin Li,
    • Lev Kotler,
    • Jeremy R. Stuart,
    • Joel A. Malek,
    • Jonathan M. Manning,
    • Alena A. Antipova,
    • Damon S. Perez,
    • Michael P. Moore,
    • Kathleen C. Hayashibara,
    • Michael R. Lyons,
    • Robert E. Beaudoin,
    • Brittany E. Coleman,
    • Michael W. Laptewicz,
    • Adam E. Sannicandro,
    • Michael D. Rhodes,
    • Rajesh K. Gottimukkala,
    • Shan Yang,
    • Vineet Bafna,
    • Ali Bashir,
    • Andrew MacBride,
    • Can Alkan,
    • Jeffrey M. Kidd,
    • Evan E. Eichler,
    • Martin G. Reese,
    • Francisco M. De La Vega,
    • and Alan P. Blanchard
    Genome Res. September 2009 19: 1527-1541; Published in Advance June 22, 2009, doi:10.1101/gr.091868.109
    OPEN ACCESS ARTICLE
  3. LETTER: Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    • David S. Johnson,
    • Wei Li,
    • D. Benjamin Gordon,
    • Arindam Bhattacharjee,
    • Bo Curry,
    • Jayati Ghosh,
    • Leonardo Brizuela,
    • Jason S. Carroll,
    • Myles Brown,
    • Paul Flicek,
    • Christoph M. Koch,
    • Ian Dunham,
    • Mark Bieda,
    • Xiaoqin Xu,
    • Peggy J. Farnham,
    • Philipp Kapranov,
    • David A. Nix,
    • Thomas R. Gingeras,
    • Xinmin Zhang,
    • Heather Holster,
    • Nan Jiang,
    • Roland D. Green,
    • Jun S. Song,
    • Scott A. McCuine,
    • Elizabeth Anton,
    • Loan Nguyen,
    • Nathan D. Trinklein,
    • Zhen Ye,
    • Keith Ching,
    • David Hawkins,
    • Bing Ren,
    • Peter C. Scacheri,
    • Joel Rozowsky,
    • Alexander Karpikov,
    • Ghia Euskirchen,
    • Sherman Weissman,
    • Mark Gerstein,
    • Michael Snyder,
    • Annie Yang,
    • Zarmik Moqtaderi,
    • Heather Hirsch,
    • Hennady P. Shulha,
    • Yutao Fu,
    • Zhiping Weng,
    • Kevin Struhl,
    • Richard M. Myers,
    • Jason D. Lieb,
    • and X. Shirley Liu
    Genome Res. March 2008 18: 393-403; Published in Advance February 7, 2008, doi:10.1101/gr.7080508
  4. LETTER: Nucleosome positioning signals in genomic DNA
    • Heather E. Peckham,
    • Robert E. Thurman,
    • Yutao Fu,
    • John A. Stamatoyannopoulos,
    • William Stafford Noble,
    • Kevin Struhl,
    • and Zhiping Weng
    Genome Res. August 2007 17: 1170-1177; Published in Advance July 9, 2007, doi:10.1101/gr.6101007
  5. LETTER: Transcription factor binding and modified histones in human bidirectional promoters
    • Jane M. Lin,
    • Patrick J. Collins,
    • Nathan D. Trinklein,
    • Yutao Fu,
    • Hualin Xi,
    • Richard M. Myers,
    • and Zhiping Weng
    Genome Res. June 2007 17: 818-827; doi:10.1101/gr.5623407
    OPEN ACCESS ARTICLE
  6. LETTER: Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
    • Zhengdong D. Zhang,
    • Alberto Paccanaro,
    • Yutao Fu,
    • Sherman Weissman,
    • Zhiping Weng,
    • Joseph Chang,
    • Michael Snyder,
    • and Mark B. Gerstein
    Genome Res. June 2007 17: 787-797; doi:10.1101/gr.5573107
    OPEN ACCESS ARTICLE
  7. LETTER: Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1
    • Hualin Xi,
    • Yong Yu,
    • Yutao Fu,
    • Jonathan Foley,
    • Anason Halees,
    • and Zhiping Weng
    Genome Res. June 2007 17: 798-806; doi:10.1101/gr.5754707
    OPEN ACCESS ARTICLE
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