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Yoshihide Hayashizaki
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Displaying results 1-10 of
38
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Method
:
Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs
Michiel de Hoon
,
Alessandro Bonetti
,
Charles Plessy
,
Yoshinari Ando
,
Chung-Chau Hon
,
Yuri Ishizu
,
Masayoshi Itoh
,
Sachi Kato
,
Dongyan Lin
,
Sho Maekawa
,
Mitsuyoshi Murata
,
Hiromi Nishiyori
,
Jay W. Shin
,
Jens Stolte
,
Ana Maria Suzuki
,
Michihira Tagami
,
Hazuki Takahashi
,
Supat Thongjuea
,
Alistair R.R. Forrest
,
Yoshihide Hayashizaki
,
Juha Kere
,
and
Piero Carninci
Genome Res.
September 2022
32
:
1727
-
1735
;
Published in Advance
August 12, 2022
,
doi:
10.1101/gr.276647.122
Abstract
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Research
:
Comparative transcriptomics of primary cells in vertebrates
Tanvir Alam
,
Saumya Agrawal
,
Jessica Severin
,
Robert S. Young
,
Robin Andersson
,
Erik Arner
,
Akira Hasegawa
,
Marina Lizio
,
Jordan A. Ramilowski
,
Imad Abugessaisa
,
Yuri Ishizu
,
Shohei Noma
,
Hiroshi Tarui
,
Martin S. Taylor
,
Timo Lassmann
,
Masayoshi Itoh
,
Takeya Kasukawa
,
Hideya Kawaji
,
Luigi Marchionni
,
Guojun Sheng
,
Alistair R.R. Forrest
,
Levon M. Khachigian
,
Yoshihide Hayashizaki
,
Piero Carninci
,
and
Michiel J.L. de Hoon
Genome Res.
July 2020
30
:
951
-
961
;
Published in Advance
July 27, 2020
,
doi:
10.1101/gr.255679.119
Abstract
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Research
:
The frequent evolutionary birth and death of functional promoters in mouse and human
Robert S. Young
,
Yoshihide Hayashizaki
,
Robin Andersson
,
Albin Sandelin
,
Hideya Kawaji
,
Masayoshi Itoh
,
Timo Lassmann
,
Piero Carninci
,
The FANTOM Consortium
,
Wendy A. Bickmore
,
Alistair R. Forrest
,
and
Martin S. Taylor
Genome Res.
October 2015
25
:
1546
-
1557
;
Published in Advance
July 30, 2015
,
doi:
10.1101/gr.190546.115
Abstract
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Method
:
Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing
Hideya Kawaji
,
Marina Lizio
,
Masayoshi Itoh
,
Mutsumi Kanamori-Katayama
,
Ai Kaiho
,
Hiromi Nishiyori-Sueki
,
Jay W. Shin
,
Miki Kojima-Ishiyama
,
Mitsuoki Kawano
,
Mitsuyoshi Murata
,
Noriko Ninomiya-Fukuda
,
Sachi Ishikawa-Kato
,
Sayaka Nagao-Sato
,
Shohei Noma
,
Yoshihide Hayashizaki
,
Alistair R.R. Forrest
,
Piero Carninci
,
and
The FANTOM Consortium
Genome Res.
April 2014
24
:
708
-
717
;
Published in Advance
March 27, 2014
,
doi:
10.1101/gr.156232.113
Abstract
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Research
:
Promoter architecture of mouse olfactory receptor genes
Charles Plessy
,
Giovanni Pascarella
,
Nicolas Bertin
,
Altuna Akalin
,
Claudia Carrieri
,
Anne Vassalli
,
Dejan Lazarevic
,
Jessica Severin
,
Christina Vlachouli
,
Roberto Simone
,
Geoffrey J. Faulkner
,
Jun Kawai
,
Carsten O. Daub
,
Silvia Zucchelli
,
Yoshihide Hayashizaki
,
Peter Mombaerts
,
Boris Lenhard
,
Stefano Gustincich
,
and
Piero Carninci
Genome Res.
March 2012
22
:
486
-
497
;
Published in Advance
December 22, 2011
,
doi:
10.1101/gr.126201.111
Abstract
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Method
:
Unamplified cap analysis of gene expression on a single-molecule sequencer
Mutsumi Kanamori-Katayama
,
Masayoshi Itoh
,
Hideya Kawaji
,
Timo Lassmann
,
Shintaro Katayama
,
Miki Kojima
,
Nicolas Bertin
,
Ai Kaiho
,
Noriko Ninomiya
,
Carsten O. Daub
,
Piero Carninci
,
Alistair R.R. Forrest
,
and
Yoshihide Hayashizaki
Genome Res.
July 2011
21
:
1150
-
1159
;
Published in Advance
May 19, 2011
,
doi:
10.1101/gr.115469.110
Abstract
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Research
:
A comprehensive survey of 3′ animal miRNA modification events and a possible role for 3′ adenylation in modulating miRNA targeting effectiveness
A. Maxwell Burroughs
,
Yoshinari Ando
,
Michiel J.L. de Hoon
,
Yasuhiro Tomaru
,
Takahiro Nishibu
,
Ryo Ukekawa
,
Taku Funakoshi
,
Tsutomu Kurokawa
,
Harukazu Suzuki
,
Yoshihide Hayashizaki
,
and
Carsten O. Daub
Genome Res.
October 2010
20
:
1398
-
1410
;
Published in Advance
August 18, 2010
,
doi:
10.1101/gr.106054.110
Abstract
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Methods
:
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
Michiel J.L. de Hoon
,
Ryan J. Taft
,
Takehiro Hashimoto
,
Mutsumi Kanamori-Katayama
,
Hideya Kawaji
,
Mitsuoki Kawano
,
Mami Kishima
,
Timo Lassmann
,
Geoffrey J. Faulkner
,
John S. Mattick
,
Carsten O. Daub
,
Piero Carninci
,
Jun Kawai
,
Harukazu Suzuki
,
and
Yoshihide Hayashizaki
Genome Res.
February 2010
20
:
257
-
264
;
Published in Advance
January 5, 2010
,
doi:
10.1101/gr.095273.109
Abstract
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Methods
:
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE
Eivind Valen
,
Giovanni Pascarella
,
Alistair Chalk
,
Norihiro Maeda
,
Miki Kojima
,
Chika Kawazu
,
Mitsuyoshi Murata
,
Hiromi Nishiyori
,
Dejan Lazarevic
,
Dario Motti
,
Troels Torben Marstrand
,
Man-Hung Eric Tang
,
Xiaobei Zhao
,
Anders Krogh
,
Ole Winther
,
Takahiro Arakawa
,
Jun Kawai
,
Christine Wells
,
Carsten Daub
,
Matthias Harbers
,
Yoshihide Hayashizaki
,
Stefano Gustincich
,
Albin Sandelin
,
and
Piero Carninci
Genome Res.
February 2009
19
:
255
-
265
;
Published in Advance
December 11, 2008
,
doi:
10.1101/gr.084541.108
Abstract
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ARTICLE
:
A code for transcription initiation in mammalian genomes
Martin C. Frith
,
Eivind Valen
,
Anders Krogh
,
Yoshihide Hayashizaki
,
Piero Carninci
,
and
Albin Sandelin
Genome Res.
January 2008
18
:
1
-
12
;
Published in Advance
November 21, 2007
,
doi:
10.1101/gr.6831208
Abstract
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