Searching journal content for Yoshihide Hayashizaki in author.

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  1. Method: Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs
    • Michiel de Hoon,
    • Alessandro Bonetti,
    • Charles Plessy,
    • Yoshinari Ando,
    • Chung-Chau Hon,
    • Yuri Ishizu,
    • Masayoshi Itoh,
    • Sachi Kato,
    • Dongyan Lin,
    • Sho Maekawa,
    • Mitsuyoshi Murata,
    • Hiromi Nishiyori,
    • Jay W. Shin,
    • Jens Stolte,
    • Ana Maria Suzuki,
    • Michihira Tagami,
    • Hazuki Takahashi,
    • Supat Thongjuea,
    • Alistair R.R. Forrest,
    • Yoshihide Hayashizaki,
    • Juha Kere,
    • and Piero Carninci
    Genome Res. September 2022 32: 1727-1735; Published in Advance August 12, 2022, doi:10.1101/gr.276647.122
    OPEN ACCESS ARTICLE
  2. Research: Comparative transcriptomics of primary cells in vertebrates
    • Tanvir Alam,
    • Saumya Agrawal,
    • Jessica Severin,
    • Robert S. Young,
    • Robin Andersson,
    • Erik Arner,
    • Akira Hasegawa,
    • Marina Lizio,
    • Jordan A. Ramilowski,
    • Imad Abugessaisa,
    • Yuri Ishizu,
    • Shohei Noma,
    • Hiroshi Tarui,
    • Martin S. Taylor,
    • Timo Lassmann,
    • Masayoshi Itoh,
    • Takeya Kasukawa,
    • Hideya Kawaji,
    • Luigi Marchionni,
    • Guojun Sheng,
    • Alistair R.R. Forrest,
    • Levon M. Khachigian,
    • Yoshihide Hayashizaki,
    • Piero Carninci,
    • and Michiel J.L. de Hoon
    Genome Res. July 2020 30: 951-961; Published in Advance July 27, 2020, doi:10.1101/gr.255679.119
    OPEN ACCESS ARTICLE
  3. Research: The frequent evolutionary birth and death of functional promoters in mouse and human
    • Robert S. Young,
    • Yoshihide Hayashizaki,
    • Robin Andersson,
    • Albin Sandelin,
    • Hideya Kawaji,
    • Masayoshi Itoh,
    • Timo Lassmann,
    • Piero Carninci,
    • The FANTOM Consortium,
    • Wendy A. Bickmore,
    • Alistair R. Forrest,
    • and Martin S. Taylor
    Genome Res. October 2015 25: 1546-1557; Published in Advance July 30, 2015, doi:10.1101/gr.190546.115
    OPEN ACCESS ARTICLE
  4. Method: Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing
    • Hideya Kawaji,
    • Marina Lizio,
    • Masayoshi Itoh,
    • Mutsumi Kanamori-Katayama,
    • Ai Kaiho,
    • Hiromi Nishiyori-Sueki,
    • Jay W. Shin,
    • Miki Kojima-Ishiyama,
    • Mitsuoki Kawano,
    • Mitsuyoshi Murata,
    • Noriko Ninomiya-Fukuda,
    • Sachi Ishikawa-Kato,
    • Sayaka Nagao-Sato,
    • Shohei Noma,
    • Yoshihide Hayashizaki,
    • Alistair R.R. Forrest,
    • Piero Carninci,
    • and The FANTOM Consortium
    Genome Res. April 2014 24: 708-717; Published in Advance March 27, 2014, doi:10.1101/gr.156232.113
    OPEN ACCESS ARTICLE
  5. Research: Promoter architecture of mouse olfactory receptor genes
    • Charles Plessy,
    • Giovanni Pascarella,
    • Nicolas Bertin,
    • Altuna Akalin,
    • Claudia Carrieri,
    • Anne Vassalli,
    • Dejan Lazarevic,
    • Jessica Severin,
    • Christina Vlachouli,
    • Roberto Simone,
    • Geoffrey J. Faulkner,
    • Jun Kawai,
    • Carsten O. Daub,
    • Silvia Zucchelli,
    • Yoshihide Hayashizaki,
    • Peter Mombaerts,
    • Boris Lenhard,
    • Stefano Gustincich,
    • and Piero Carninci
    Genome Res. March 2012 22: 486-497; Published in Advance December 22, 2011, doi:10.1101/gr.126201.111
    OPEN ACCESS ARTICLE
  6. Method: Unamplified cap analysis of gene expression on a single-molecule sequencer
    • Mutsumi Kanamori-Katayama,
    • Masayoshi Itoh,
    • Hideya Kawaji,
    • Timo Lassmann,
    • Shintaro Katayama,
    • Miki Kojima,
    • Nicolas Bertin,
    • Ai Kaiho,
    • Noriko Ninomiya,
    • Carsten O. Daub,
    • Piero Carninci,
    • Alistair R.R. Forrest,
    • and Yoshihide Hayashizaki
    Genome Res. July 2011 21: 1150-1159; Published in Advance May 19, 2011, doi:10.1101/gr.115469.110
  7. Research: A comprehensive survey of 3′ animal miRNA modification events and a possible role for 3′ adenylation in modulating miRNA targeting effectiveness
    • A. Maxwell Burroughs,
    • Yoshinari Ando,
    • Michiel J.L. de Hoon,
    • Yasuhiro Tomaru,
    • Takahiro Nishibu,
    • Ryo Ukekawa,
    • Taku Funakoshi,
    • Tsutomu Kurokawa,
    • Harukazu Suzuki,
    • Yoshihide Hayashizaki,
    • and Carsten O. Daub
    Genome Res. October 2010 20: 1398-1410; Published in Advance August 18, 2010, doi:10.1101/gr.106054.110
    OPEN ACCESS ARTICLE
  8. Methods: Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
    • Michiel J.L. de Hoon,
    • Ryan J. Taft,
    • Takehiro Hashimoto,
    • Mutsumi Kanamori-Katayama,
    • Hideya Kawaji,
    • Mitsuoki Kawano,
    • Mami Kishima,
    • Timo Lassmann,
    • Geoffrey J. Faulkner,
    • John S. Mattick,
    • Carsten O. Daub,
    • Piero Carninci,
    • Jun Kawai,
    • Harukazu Suzuki,
    • and Yoshihide Hayashizaki
    Genome Res. February 2010 20: 257-264; Published in Advance January 5, 2010, doi:10.1101/gr.095273.109
    OPEN ACCESS ARTICLE
  9. Methods: Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE
    • Eivind Valen,
    • Giovanni Pascarella,
    • Alistair Chalk,
    • Norihiro Maeda,
    • Miki Kojima,
    • Chika Kawazu,
    • Mitsuyoshi Murata,
    • Hiromi Nishiyori,
    • Dejan Lazarevic,
    • Dario Motti,
    • Troels Torben Marstrand,
    • Man-Hung Eric Tang,
    • Xiaobei Zhao,
    • Anders Krogh,
    • Ole Winther,
    • Takahiro Arakawa,
    • Jun Kawai,
    • Christine Wells,
    • Carsten Daub,
    • Matthias Harbers,
    • Yoshihide Hayashizaki,
    • Stefano Gustincich,
    • Albin Sandelin,
    • and Piero Carninci
    Genome Res. February 2009 19: 255-265; Published in Advance December 11, 2008, doi:10.1101/gr.084541.108
    OPEN ACCESS ARTICLE
  10. ARTICLE: A code for transcription initiation in mammalian genomes
    • Martin C. Frith,
    • Eivind Valen,
    • Anders Krogh,
    • Yoshihide Hayashizaki,
    • Piero Carninci,
    • and Albin Sandelin
    Genome Res. January 2008 18: 1-12; Published in Advance November 21, 2007, doi:10.1101/gr.6831208
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