Searching journal content for Yoav Gilad in author.

Displaying results 1-10 of 11
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  1. Research: Oxygen-induced stress reveals context-specific gene regulatory effects in human brain organoids
    • Benjamin D. Umans and
    • Yoav Gilad
    Genome Res. August 2025 35: 1689-1700; Published in Advance June 2, 2025, doi:10.1101/gr.280219.124
    OPEN ACCESS ARTICLE
  2. Method: Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis
    • Chiaowen Joyce Hsiao,
    • PoYuan Tung,
    • John D. Blischak,
    • Jonathan E. Burnett,
    • Kenneth A. Barr,
    • Kushal K. Dey,
    • Matthew Stephens,
    • and Yoav Gilad
    Genome Res. April 2020 30: 611-621; Published in Advance April 20, 2020, doi:10.1101/gr.247759.118
    OPEN ACCESS ARTICLE
  3. Resource: A comparison of gene expression and DNA methylation patterns across tissues and species
    • Lauren E. Blake,
    • Julien Roux,
    • Irene Hernando-Herraez,
    • Nicholas E. Banovich,
    • Raquel Garcia Perez,
    • Chiaowen Joyce Hsiao,
    • Ittai Eres,
    • Claudia Cuevas,
    • Tomas Marques-Bonet,
    • and Yoav Gilad
    Genome Res. February 2020 30: 250-262; Published in Advance January 17, 2020, doi:10.1101/gr.254904.119
    OPEN ACCESS ARTICLE
  4. Resource: Impact of regulatory variation across human iPSCs and differentiated cells
    • Nicholas E. Banovich,
    • Yang I. Li,
    • Anil Raj,
    • Michelle C. Ward,
    • Peyton Greenside,
    • Diego Calderon,
    • Po Yuan Tung,
    • Jonathan E. Burnett,
    • Marsha Myrthil,
    • Samantha M. Thomas,
    • Courtney K. Burrows,
    • Irene Gallego Romero,
    • Bryan J. Pavlovic,
    • Anshul Kundaje,
    • Jonathan K. Pritchard,
    • and Yoav Gilad
    Genome Res. January 2018 28: 122-131; Published in Advance December 5, 2017, doi:10.1101/gr.224436.117
    OPEN ACCESS ARTICLE
  5. Research: Bacterial infection remodels the DNA methylation landscape of human dendritic cells
    • Alain Pacis,
    • Ludovic Tailleux,
    • Alexander M. Morin,
    • John Lambourne,
    • Julia L. MacIsaac,
    • Vania Yotova,
    • Anne Dumaine,
    • Anne Danckaert,
    • Francesca Luca,
    • Jean-Christophe Grenier,
    • Kasper D. Hansen,
    • Brigitte Gicquel,
    • Miao Yu,
    • Athma Pai,
    • Chuan He,
    • Jenny Tung,
    • Tomi Pastinen,
    • Michael S. Kobor,
    • Roger Pique-Regi,
    • Yoav Gilad,
    • and Luis B. Barreiro
    Genome Res. December 2015 25: 1801-1811; Published in Advance September 21, 2015, doi:10.1101/gr.192005.115
  6. Research: Comparative RNA sequencing reveals substantial genetic variation in endangered primates
    • George H. Perry,
    • Páll Melsted,
    • John C. Marioni,
    • Ying Wang,
    • Russell Bainer,
    • Joseph K. Pickrell,
    • Katelyn Michelini,
    • Sarah Zehr,
    • Anne D. Yoder,
    • Matthew Stephens,
    • Jonathan K. Pritchard,
    • and Yoav Gilad
    Genome Res. April 2012 22: 602-610; Published in Advance December 29, 2011, doi:10.1101/gr.130468.111
    OPEN ACCESS ARTICLE
  7. Method: Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
    • Roger Pique-Regi,
    • Jacob F. Degner,
    • Athma A. Pai,
    • Daniel J. Gaffney,
    • Yoav Gilad,
    • and Jonathan K. Pritchard
    Genome Res. March 2011 21: 447-455; Published in Advance November 24, 2010, doi:10.1101/gr.112623.110
    OPEN ACCESS ARTICLE
  8. Letter: Sex-specific and lineage-specific alternative splicing in primates
    • Ran Blekhman,
    • John C. Marioni,
    • Paul Zumbo,
    • Matthew Stephens,
    • and Yoav Gilad
    Genome Res. February 2010 20: 180-189; Published in Advance December 15, 2009, doi:10.1101/gr.099226.109
    OPEN ACCESS ARTICLE
  9. Methods: RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    • John C. Marioni,
    • Christopher E. Mason,
    • Shrikant M. Mane,
    • Matthew Stephens,
    • and Yoav Gilad
    Genome Res. September 2008 18: 1509-1517; Published in Advance June 11, 2008, doi:10.1101/gr.079558.108
    OPEN ACCESS ARTICLE
  10. LETTER: Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
    • Yoav Gilad,
    • Scott A. Rifkin,
    • Paul Bertone,
    • Mark Gerstein,
    • and Kevin P. White
    Genome Res. May 2005 15: 674-680; doi:10.1101/gr.3335705
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