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Yoav Gilad
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11
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Research
:
Oxygen-induced stress reveals context-specific gene regulatory effects in human brain organoids
Benjamin D. Umans
and
Yoav Gilad
Genome Res.
August 2025
35
:
1689
-
1700
;
Published in Advance
June 2, 2025
,
doi:
10.1101/gr.280219.124
Abstract
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Method
:
Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis
Chiaowen Joyce Hsiao
,
PoYuan Tung
,
John D. Blischak
,
Jonathan E. Burnett
,
Kenneth A. Barr
,
Kushal K. Dey
,
Matthew Stephens
,
and
Yoav Gilad
Genome Res.
April 2020
30
:
611
-
621
;
Published in Advance
April 20, 2020
,
doi:
10.1101/gr.247759.118
Abstract
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Resource
:
A comparison of gene expression and DNA methylation patterns across tissues and species
Lauren E. Blake
,
Julien Roux
,
Irene Hernando-Herraez
,
Nicholas E. Banovich
,
Raquel Garcia Perez
,
Chiaowen Joyce Hsiao
,
Ittai Eres
,
Claudia Cuevas
,
Tomas Marques-Bonet
,
and
Yoav Gilad
Genome Res.
February 2020
30
:
250
-
262
;
Published in Advance
January 17, 2020
,
doi:
10.1101/gr.254904.119
Abstract
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Resource
:
Impact of regulatory variation across human iPSCs and differentiated cells
Nicholas E. Banovich
,
Yang I. Li
,
Anil Raj
,
Michelle C. Ward
,
Peyton Greenside
,
Diego Calderon
,
Po Yuan Tung
,
Jonathan E. Burnett
,
Marsha Myrthil
,
Samantha M. Thomas
,
Courtney K. Burrows
,
Irene Gallego Romero
,
Bryan J. Pavlovic
,
Anshul Kundaje
,
Jonathan K. Pritchard
,
and
Yoav Gilad
Genome Res.
January 2018
28
:
122
-
131
;
Published in Advance
December 5, 2017
,
doi:
10.1101/gr.224436.117
Abstract
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Research
:
Bacterial infection remodels the DNA methylation landscape of human dendritic cells
Alain Pacis
,
Ludovic Tailleux
,
Alexander M. Morin
,
John Lambourne
,
Julia L. MacIsaac
,
Vania Yotova
,
Anne Dumaine
,
Anne Danckaert
,
Francesca Luca
,
Jean-Christophe Grenier
,
Kasper D. Hansen
,
Brigitte Gicquel
,
Miao Yu
,
Athma Pai
,
Chuan He
,
Jenny Tung
,
Tomi Pastinen
,
Michael S. Kobor
,
Roger Pique-Regi
,
Yoav Gilad
,
and
Luis B. Barreiro
Genome Res.
December 2015
25
:
1801
-
1811
;
Published in Advance
September 21, 2015
,
doi:
10.1101/gr.192005.115
Abstract
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Research
:
Comparative RNA sequencing reveals substantial genetic variation in endangered primates
George H. Perry
,
Páll Melsted
,
John C. Marioni
,
Ying Wang
,
Russell Bainer
,
Joseph K. Pickrell
,
Katelyn Michelini
,
Sarah Zehr
,
Anne D. Yoder
,
Matthew Stephens
,
Jonathan K. Pritchard
,
and
Yoav Gilad
Genome Res.
April 2012
22
:
602
-
610
;
Published in Advance
December 29, 2011
,
doi:
10.1101/gr.130468.111
Abstract
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Method
:
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
Roger Pique-Regi
,
Jacob F. Degner
,
Athma A. Pai
,
Daniel J. Gaffney
,
Yoav Gilad
,
and
Jonathan K. Pritchard
Genome Res.
March 2011
21
:
447
-
455
;
Published in Advance
November 24, 2010
,
doi:
10.1101/gr.112623.110
Abstract
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Letter
:
Sex-specific and lineage-specific alternative splicing in primates
Ran Blekhman
,
John C. Marioni
,
Paul Zumbo
,
Matthew Stephens
,
and
Yoav Gilad
Genome Res.
February 2010
20
:
180
-
189
;
Published in Advance
December 15, 2009
,
doi:
10.1101/gr.099226.109
Abstract
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Methods
:
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
John C. Marioni
,
Christopher E. Mason
,
Shrikant M. Mane
,
Matthew Stephens
,
and
Yoav Gilad
Genome Res.
September 2008
18
:
1509
-
1517
;
Published in Advance
June 11, 2008
,
doi:
10.1101/gr.079558.108
Abstract
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LETTER
:
Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
Yoav Gilad
,
Scott A. Rifkin
,
Paul Bertone
,
Mark Gerstein
,
and
Kevin P. White
Genome Res.
May 2005
15
:
674
-
680
;
doi:
10.1101/gr.3335705
Abstract
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