Searching journal content for Ying Zhang in author.

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  1. Resource: Annotation and cluster analysis of spatiotemporal- and sex-related lncRNA expression in rhesus macaque brain
    • Siling Liu,
    • Zhengbo Wang,
    • Dong Chen,
    • Bowen Zhang,
    • Ren-Rong Tian,
    • Jing Wu,
    • Ying Zhang,
    • Kaiyu Xu,
    • Liu-Meng Yang,
    • Chao Cheng,
    • Jian Ma,
    • Longbao Lv,
    • Yong-Tang Zheng,
    • Xintian Hu,
    • Yi Zhang,
    • Xiangting Wang,
    • and Jiali Li
    Genome Res. September 2017 27: 1608-1620; Published in Advance July 7, 2017, doi:10.1101/gr.217463.116
    OPEN ACCESS ARTICLE
  2. Research: HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets
    • Bony De Kumar,
    • Hugo J. Parker,
    • Ariel Paulson,
    • Mark E. Parrish,
    • Irina Pushel,
    • Narendra Pratap Singh,
    • Ying Zhang,
    • Brian D. Slaughter,
    • Jay R. Unruh,
    • Laurence Florens,
    • Julia Zeitlinger,
    • and Robb Krumlauf
    Genome Res. September 2017 27: 1501-1512; Published in Advance August 7, 2017, doi:10.1101/gr.219386.116
  3. Research: Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression
    • Suhaida A. Selamat,
    • Brian S. Chung,
    • Luc Girard,
    • Wei Zhang,
    • Ying Zhang,
    • Mihaela Campan,
    • Kimberly D. Siegmund,
    • Michael N. Koss,
    • Jeffrey A. Hagen,
    • Wan L. Lam,
    • Stephen Lam,
    • Adi F. Gazdar,
    • and Ite A. Laird-Offringa
    Genome Res. July 2012 22: 1197-1211; Published in Advance May 21, 2012, doi:10.1101/gr.132662.111
  4. Article: Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
    • Yong Cheng,
    • Weisheng Wu,
    • Swathi Ashok Kumar,
    • Duonan Yu,
    • Wulan Deng,
    • Tamara Tripic,
    • David C. King,
    • Kuan-Bei Chen,
    • Ying Zhang,
    • Daniela Drautz,
    • Belinda Giardine,
    • Stephan C. Schuster,
    • Webb Miller,
    • Francesca Chiaromonte,
    • Yu Zhang,
    • Gerd A. Blobel,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. December 2009 19: 2172-2184; Published in Advance November 3, 2009, doi:10.1101/gr.098921.109
    OPEN ACCESS ARTICLE
  5. LETTER: Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif
    • Yong Cheng,
    • David C. King,
    • Louis C. Dore,
    • Xinmin Zhang,
    • Yuepin Zhou,
    • Ying Zhang,
    • Christine Dorman,
    • Demesew Abebe,
    • Swathi A. Kumar,
    • Francesca Chiaromonte,
    • Webb Miller,
    • Roland D. Green,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. December 2008 18: 1896-1905; Published in Advance September 25, 2008, doi:10.1101/gr.083089.108
    OPEN ACCESS ARTICLE
  6. LETTER: Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data
    • David C. King,
    • James Taylor,
    • Ying Zhang,
    • Yong Cheng,
    • Heather A. Lawson,
    • Joel Martin,
    • ENCODE groups for Transcriptional Regulation and Multispecies Sequence Analysis,
    • Francesca Chiaromonte,
    • Webb Miller,
    • and Ross C. Hardison
    Genome Res. June 2007 17: 775-786; doi:10.1101/gr.5592107
    OPEN ACCESS ARTICLE
  7. LETTER: Experimental validation of predicted mammalian erythroid cis-regulatory modules
    • Hao Wang,
    • Ying Zhang,
    • Yong Cheng,
    • Yuepin Zhou,
    • David C. King,
    • James Taylor,
    • Francesca Chiaromonte,
    • Jyotsna Kasturi,
    • Hanna Petrykowska,
    • Brian Gibb,
    • Christine Dorman,
    • Webb Miller,
    • Louis C. Dore,
    • John Welch,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. December 2006 16: 1480-1492; Published in Advance October 12, 2006, doi:10.1101/gr.5353806
    OPEN ACCESS ARTICLE
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