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Y Shen
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Displaying results 1-10 of
17
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Method
:
Reference-informed prediction of alternative splicing and splicing-altering mutations from sequences
Chencheng Xu
,
Suying Bao
,
Ye Wang
,
Wenxing Li
,
Hao Chen
,
Yufeng Shen
,
Tao Jiang
,
and
Chaolin Zhang
Genome Res.
July 2024
34
:
1052
-
1065
;
Published in Advance
July 26, 2024
,
doi:
10.1101/gr.279044.124
Abstract
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Resource
:
Genome-wide dynamics of alternative polyadenylation in rice
Haihui Fu
,
Dewei Yang
,
Wenyue Su
,
Liuyin Ma
,
Yingjia Shen
,
Guoli Ji
,
Xinfu Ye
,
Xiaohui Wu
,
and
Qingshun Q. Li
Genome Res.
December 2016
26
:
1753
-
1760
;
Published in Advance
October 12, 2016
,
doi:
10.1101/gr.210757.116
Abstract
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Method
:
A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening
Yarui Diao
,
Bin Li
,
Zhipeng Meng
,
Inkyung Jung
,
Ah Young Lee
,
Jesse Dixon
,
Lenka Maliskova
,
Kun-liang Guan
,
Yin Shen
,
and
Bing Ren
Genome Res.
March 2016
26
:
397
-
405
;
Published in Advance
January 26, 2016
,
doi:
10.1101/gr.197152.115
Abstract
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Research
:
SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes
Yue Shen
,
Giovanni Stracquadanio
,
Yun Wang
,
Kun Yang
,
Leslie A. Mitchell
,
Yaxin Xue
,
Yizhi Cai
,
Tai Chen
,
Jessica S. Dymond
,
Kang Kang
,
Jianhui Gong
,
Xiaofan Zeng
,
Yongfen Zhang
,
Yingrui Li
,
Qiang Feng
,
Xun Xu
,
Jun Wang
,
Jian Wang
,
Huanming Yang
,
Jef D. Boeke
,
and
Joel S. Bader
Genome Res.
January 2016
26
:
36
-
49
;
Published in Advance
November 13, 2015
,
doi:
10.1101/gr.193433.115
Abstract
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Research
:
The evolution of evolvability in microRNA target sites in vertebrates
Jin Xu
,
Rui Zhang
,
Yang Shen
,
Guojing Liu
,
Xuemei Lu
,
and
Chung-I Wu
Genome Res.
November 2013
23
:
1810
-
1816
;
Published in Advance
September 27, 2013
,
doi:
10.1101/gr.148916.112
Abstract
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Research
:
Complex expression dynamics and robustness in
C. elegans
insulin networks
Ashlyn D. Ritter
,
Yuan Shen
,
Juan Fuxman Bass
,
Sankarganesh Jeyaraj
,
Bart Deplancke
,
Arnab Mukhopadhyay
,
Jian Xu
,
Monica Driscoll
,
Heidi A. Tissenbaum
,
and
Albertha J.M. Walhout
Genome Res.
June 2013
23
:
954
-
965
;
Published in Advance
March 28, 2013
,
doi:
10.1101/gr.150466.112
Abstract
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Method
:
Genome-wide detection of natural selection in African Americans pre- and post-admixture
Wenfei Jin
,
Shuhua Xu
,
Haifeng Wang
,
Yongguo Yu
,
Yiping Shen
,
Bailin Wu
,
and
Li Jin
Genome Res.
March 2012
22
:
519
-
527
;
Published in Advance
November 29, 2011
,
doi:
10.1101/gr.124784.111
Abstract
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Research
:
Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing
Yingjia Shen
,
R.C. Venu
,
Kan Nobuta
,
Xiaohui Wu
,
Varun Notibala
,
Caghan Demirci
,
Blake C. Meyers
,
Guo-Liang Wang
,
Guoli Ji
,
and
Qingshun Q. Li
Genome Res.
September 2011
21
:
1478
-
1486
;
Published in Advance
August 3, 2011
,
doi:
10.1101/gr.114744.110
Abstract
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Research
:
Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility
Xuemei Lu
,
Joshua A. Shapiro
,
Chau-Ti Ting
,
Yan Li
,
Chunyan Li
,
Jin Xu
,
Huanwei Huang
,
Ya-Jen Cheng
,
Anthony J. Greenberg
,
Shou-Hsien Li
,
Mao-Lien Wu
,
Yang Shen
,
and
Chung-I Wu
Genome Res.
August 2010
20
:
1097
-
1102
;
Published in Advance
May 28, 2010
,
doi:
10.1101/gr.076620.108
Abstract
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Resource
:
A SNP discovery method to assess variant allele probability from next-generation resequencing data
Yufeng Shen
,
Zhengzheng Wan
,
Cristian Coarfa
,
Rafal Drabek
,
Lei Chen
,
Elizabeth A. Ostrowski
,
Yue Liu
,
George M. Weinstock
,
David A. Wheeler
,
Richard A. Gibbs
,
and
Fuli Yu
Genome Res.
February 2010
20
:
273
-
280
;
Published in Advance
December 17, 2009
,
doi:
10.1101/gr.096388.109
Abstract
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