Searching journal content for Y Shen in author.

Displaying results 1-10 of 17
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  1. Method: Reference-informed prediction of alternative splicing and splicing-altering mutations from sequences
    • Chencheng Xu,
    • Suying Bao,
    • Ye Wang,
    • Wenxing Li,
    • Hao Chen,
    • Yufeng Shen,
    • Tao Jiang,
    • and Chaolin Zhang
    Genome Res. July 2024 34: 1052-1065; Published in Advance July 26, 2024, doi:10.1101/gr.279044.124
    OPEN ACCESS ARTICLE
  2. Resource: Genome-wide dynamics of alternative polyadenylation in rice
    • Haihui Fu,
    • Dewei Yang,
    • Wenyue Su,
    • Liuyin Ma,
    • Yingjia Shen,
    • Guoli Ji,
    • Xinfu Ye,
    • Xiaohui Wu,
    • and Qingshun Q. Li
    Genome Res. December 2016 26: 1753-1760; Published in Advance October 12, 2016, doi:10.1101/gr.210757.116
  3. Method: A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening
    • Yarui Diao,
    • Bin Li,
    • Zhipeng Meng,
    • Inkyung Jung,
    • Ah Young Lee,
    • Jesse Dixon,
    • Lenka Maliskova,
    • Kun-liang Guan,
    • Yin Shen,
    • and Bing Ren
    Genome Res. March 2016 26: 397-405; Published in Advance January 26, 2016, doi:10.1101/gr.197152.115
  4. Research: SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes
    • Yue Shen,
    • Giovanni Stracquadanio,
    • Yun Wang,
    • Kun Yang,
    • Leslie A. Mitchell,
    • Yaxin Xue,
    • Yizhi Cai,
    • Tai Chen,
    • Jessica S. Dymond,
    • Kang Kang,
    • Jianhui Gong,
    • Xiaofan Zeng,
    • Yongfen Zhang,
    • Yingrui Li,
    • Qiang Feng,
    • Xun Xu,
    • Jun Wang,
    • Jian Wang,
    • Huanming Yang,
    • Jef D. Boeke,
    • and Joel S. Bader
    Genome Res. January 2016 26: 36-49; Published in Advance November 13, 2015, doi:10.1101/gr.193433.115
    OPEN ACCESS ARTICLE
  5. Research: The evolution of evolvability in microRNA target sites in vertebrates
    • Jin Xu,
    • Rui Zhang,
    • Yang Shen,
    • Guojing Liu,
    • Xuemei Lu,
    • and Chung-I Wu
    Genome Res. November 2013 23: 1810-1816; Published in Advance September 27, 2013, doi:10.1101/gr.148916.112
  6. Research: Complex expression dynamics and robustness in C. elegans insulin networks
    • Ashlyn D. Ritter,
    • Yuan Shen,
    • Juan Fuxman Bass,
    • Sankarganesh Jeyaraj,
    • Bart Deplancke,
    • Arnab Mukhopadhyay,
    • Jian Xu,
    • Monica Driscoll,
    • Heidi A. Tissenbaum,
    • and Albertha J.M. Walhout
    Genome Res. June 2013 23: 954-965; Published in Advance March 28, 2013, doi:10.1101/gr.150466.112
  7. Method: Genome-wide detection of natural selection in African Americans pre- and post-admixture
    • Wenfei Jin,
    • Shuhua Xu,
    • Haifeng Wang,
    • Yongguo Yu,
    • Yiping Shen,
    • Bailin Wu,
    • and Li Jin
    Genome Res. March 2012 22: 519-527; Published in Advance November 29, 2011, doi:10.1101/gr.124784.111
  8. Research: Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing
    • Yingjia Shen,
    • R.C. Venu,
    • Kan Nobuta,
    • Xiaohui Wu,
    • Varun Notibala,
    • Caghan Demirci,
    • Blake C. Meyers,
    • Guo-Liang Wang,
    • Guoli Ji,
    • and Qingshun Q. Li
    Genome Res. September 2011 21: 1478-1486; Published in Advance August 3, 2011, doi:10.1101/gr.114744.110
  9. Research: Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility
    • Xuemei Lu,
    • Joshua A. Shapiro,
    • Chau-Ti Ting,
    • Yan Li,
    • Chunyan Li,
    • Jin Xu,
    • Huanwei Huang,
    • Ya-Jen Cheng,
    • Anthony J. Greenberg,
    • Shou-Hsien Li,
    • Mao-Lien Wu,
    • Yang Shen,
    • and Chung-I Wu
    Genome Res. August 2010 20: 1097-1102; Published in Advance May 28, 2010, doi:10.1101/gr.076620.108
  10. Resource: A SNP discovery method to assess variant allele probability from next-generation resequencing data
    • Yufeng Shen,
    • Zhengzheng Wan,
    • Cristian Coarfa,
    • Rafal Drabek,
    • Lei Chen,
    • Elizabeth A. Ostrowski,
    • Yue Liu,
    • George M. Weinstock,
    • David A. Wheeler,
    • Richard A. Gibbs,
    • and Fuli Yu
    Genome Res. February 2010 20: 273-280; Published in Advance December 17, 2009, doi:10.1101/gr.096388.109
    OPEN ACCESS ARTICLE
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