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Xiaoqiu Huang
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:
Assemblathon 1: A competitive assessment of de novo short read assembly methods
Dent Earl
,
Keith Bradnam
,
John St. John
,
Aaron Darling
,
Dawei Lin
,
Joseph Fass
,
Hung On Ken Yu
,
Vince Buffalo
,
Daniel R. Zerbino
,
Mark Diekhans
,
Ngan Nguyen
,
Pramila Nuwantha Ariyaratne
,
Wing-Kin Sung
,
Zemin Ning
,
Matthias Haimel
,
Jared T. Simpson
,
Nuno A. Fonseca
,
İnanç Birol
,
T. Roderick Docking
,
Isaac Y. Ho
,
Daniel S. Rokhsar
,
Rayan Chikhi
,
Dominique Lavenier
,
Guillaume Chapuis
,
Delphine Naquin
,
Nicolas Maillet
,
Michael C. Schatz
,
David R. Kelley
,
Adam M. Phillippy
,
Sergey Koren
,
Shiaw-Pyng Yang
,
Wei Wu
,
Wen-Chi Chou
,
Anuj Srivastava
,
Timothy I. Shaw
,
J. Graham Ruby
,
Peter Skewes-Cox
,
Miguel Betegon
,
Michelle T. Dimon
,
Victor Solovyev
,
Igor Seledtsov
,
Petr Kosarev
,
Denis Vorobyev
,
Ricardo Ramirez-Gonzalez
,
Richard Leggett
,
Dan MacLean
,
Fangfang Xia
,
Ruibang Luo
,
Zhenyu Li
,
Yinlong Xie
,
Binghang Liu
,
Sante Gnerre
,
Iain MacCallum
,
Dariusz Przybylski
,
Filipe J. Ribeiro
,
Shuangye Yin
,
Ted Sharpe
,
Giles Hall
,
Paul J. Kersey
,
Richard Durbin
,
Shaun D. Jackman
,
Jarrod A. Chapman
,
Xiaoqiu Huang
,
Joseph L. DeRisi
,
Mario Caccamo
,
Yingrui Li
,
David B. Jaffe
,
Richard E. Green
,
David Haussler
,
Ian Korf
,
and
Benedict Paten
Genome Res.
December 2011
21
:
2224
-
2241
;
Published in Advance
September 16, 2011
,
doi:
10.1101/gr.126599.111
Abstract
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Supplemental Material
OPEN ACCESS ARTICLE
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Methods
:
Physical map-assisted whole-genome shotgun sequence assemblies
René L. Warren
,
Dmitry Varabei
,
Darren Platt
,
Xiaoqiu Huang
,
David Messina
,
Shiaw-Pyng Yang
,
James W. Kronstad
,
Martin Krzywinski
,
Wesley C. Warren
,
John W. Wallis
,
LaDeana W. Hillier
,
Asif T. Chinwalla
,
Jacqueline E. Schein
,
Asim S. Siddiqui
,
Marco A. Marra
,
Richard K. Wilson
,
and
Steven J.M. Jones
Genome Res.
June 2006
16
:
768
-
775
;
doi:
10.1101/gr.5090606
Abstract
Full Text
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LETTER
:
Evolution of alternative splicing after gene duplication
Zhixi Su
,
Jianmin Wang
,
Jun Yu
,
Xiaoqiu Huang
,
and
Xun Gu
Genome Res.
February 2006
16
:
182
-
189
;
Published in Advance
December 19, 2005
,
doi:
10.1101/gr.4197006
Abstract
Full Text
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Supplemental Research Data
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Methods
:
PCAP: A Whole-Genome Assembly Program
Xiaoqiu Huang
,
Jianmin Wang
,
Srinivas Aluru
,
Shiaw-Pyng Yang
,
and
LaDeana Hillier
Genome Res.
September 2003
13
:
2164
-
2170
;
doi:
10.1101/gr.1390403
Abstract
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RESOURCE
:
CAP3: A DNA Sequence Assembly Program
Xiaoqiu Huang
and
Anup Madan
Genome Res.
September 1, 1999
9
:
868
-
877
;
doi:
10.1101/gr.9.9.868
Abstract
Full Text
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