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Xiao Liu
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Research
:
Genetic exchange with an outcrossing sister species causes severe genome-wide dysregulation in a selfing
Caenorhabditis
nematode
Dongying Xie
,
Pohao Ye
,
Yiming Ma
,
Yongbin Li
,
Xiao Liu
,
Peter Sarkies
,
and
Zhongying Zhao
Genome Res.
November/December 2022
32
:
2015
-
2027
;
Published in Advance
November 9, 2022
,
doi:
10.1101/gr.277205.122
Abstract
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Method
:
Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly
Ou Wang
,
Robert Chin
,
Xiaofang Cheng
,
Michelle Ka Yan Wu
,
Qing Mao
,
Jingbo Tang
,
Yuhui Sun
,
Ellis Anderson
,
Han K. Lam
,
Dan Chen
,
Yujun Zhou
,
Linying Wang
,
Fei Fan
,
Yan Zou
,
Yinlong Xie
,
Rebecca Yu Zhang
,
Snezana Drmanac
,
Darlene Nguyen
,
Chongjun Xu
,
Christian Villarosa
,
Scott Gablenz
,
Nina Barua
,
Staci Nguyen
,
Wenlan Tian
,
Jia Sophie Liu
,
Jingwan Wang
,
Xiao Liu
,
Xiaojuan Qi
,
Ao Chen
,
He Wang
,
Yuliang Dong
,
Wenwei Zhang
,
Andrei Alexeev
,
Huanming Yang
,
Jian Wang
,
Karsten Kristiansen
,
Xun Xu
,
Radoje Drmanac
,
and
Brock A. Peters
Genome Res.
May 2019
29
:
798
-
808
;
Published in Advance
April 2, 2019
,
doi:
10.1101/gr.245126.118
Abstract
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Research
:
Whole-genome sequencing identifies recurrent mutations in hepatocellular carcinoma
Zhengyan Kan
,
Hancheng Zheng
,
Xiao Liu
,
Shuyu Li
,
Thomas D. Barber
,
Zhuolin Gong
,
Huan Gao
,
Ke Hao
,
Melinda D. Willard
,
Jiangchun Xu
,
Robert Hauptschein
,
Paul A. Rejto
,
Julio Fernandez
,
Guan Wang
,
Qinghui Zhang
,
Bo Wang
,
Ronghua Chen
,
Jian Wang
,
Nikki P. Lee
,
Wei Zhou
,
Zhao Lin
,
Zhiyu Peng
,
Kang Yi
,
Shengpei Chen
,
Lin Li
,
Xiaomei Fan
,
Jie Yang
,
Rui Ye
,
Jia Ju
,
Kai Wang
,
Heather Estrella
,
Shibing Deng
,
Ping Wei
,
Ming Qiu
,
Isabella H. Wulur
,
Jiangang Liu
,
Mariam E. Ehsani
,
Chunsheng Zhang
,
Andrey Loboda
,
Wing Kin Sung
,
Amit Aggarwal
,
Ronnie T. Poon
,
Sheung Tat Fan
,
Jun Wang
,
James Hardwick
,
Christoph Reinhard
,
Hongyue Dai
,
Yingrui Li
,
John M. Luk
,
and
Mao Mao
Genome Res.
September 2013
23
:
1422
-
1433
;
Published in Advance
June 20, 2013
,
doi:
10.1101/gr.154492.113
Abstract
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LETTER
:
Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection
Xiao Liu
,
Cheol-Koo Lee
,
Joshua A. Granek
,
Neil D. Clarke
,
and
Jason D. Lieb
Genome Res.
December 2006
16
:
1517
-
1528
;
Published in Advance
October 19, 2006
,
doi:
10.1101/gr.5655606
Abstract
Full Text
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Methods
:
DIP-chip: Rapid and accurate determination of DNA-binding specificity
Xiao Liu
,
David M. Noll
,
Jason D. Lieb
,
and
Neil D. Clarke
Genome Res.
March 2005
15
:
421
-
427
;
Published in Advance
February 14, 2005
,
doi:
10.1101/gr.3256505
Abstract
Full Text
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