Searching journal content for X N Chen in author.

Displaying results 1-10 of 47
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  1. Method: Nanopore sequencing identifies high-frequency somatic structural variations in laryngeal squamous cell carcinoma genomes
    • Xuyan Liu,
    • Lin Xia,
    • Yixin Qiao,
    • Yang Li,
    • Yan Huang,
    • Bingyan Yue,
    • Xi Liang,
    • Xin Yang,
    • Honghui Zhang,
    • Jiaxun Zhang,
    • Xiao Chen,
    • Dan Xie,
    • and Jifeng Liu
    Genome Res. April 8, 2026 gr.281046.125; Published in Advance April 8, 2026, doi:10.1101/gr.281046.125
    OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
  2. Research: Cell-type- and chromosome-specific chromatin landscapes and DNA replication programs of Drosophila testis tumor stem cell–like cells
    • Jennifer A. Urban,
    • Daniel Ringwalt,
    • John M. Urban,
    • Wingel Xue,
    • Ryan Gleason,
    • Keji Zhao,
    • and Xin Chen
    Genome Res. January 2026 36: 83-101; Published in Advance December 10, 2025, doi:10.1101/gr.280809.125
    OPEN ACCESS ARTICLE
  3. Resource: Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise
    • Aliza B. Rubenstein,
    • Gregory R. Smith,
    • Zidong Zhang,
    • Xi Chen,
    • Toby L. Chambers,
    • Frederique Ruf-Zamojski,
    • Natalia Mendelev,
    • Wan Sze Cheng,
    • Michel Zamojski,
    • Mary Anne S. Amper,
    • Venugopalan D. Nair,
    • Andrew R. Marderstein,
    • Stephen B. Montgomery,
    • Olga G. Troyanskaya,
    • Elena Zaslavsky,
    • Todd Trappe,
    • Scott Trappe,
    • and Stuart C. Sealfon
    Genome Res. July 2025 35: 1664-1677; Published in Advance May 20, 2025, doi:10.1101/gr.280051.124
  4. Research: Chromatin interaction maps identify oncogenic targets of enhancer duplications in cancer
    • Yueqiang Song,
    • Fuyuan Li,
    • Shangzi Wang,
    • Yuntong Wang,
    • Cong Lai,
    • Lian Chen,
    • Ning Jiang,
    • Jin Li,
    • Xingdong Chen,
    • Swneke D. Bailey,
    • and Xiaoyang Zhang
    Genome Res. October 2024 34: 1514-1527; Published in Advance October 18, 2024, doi:10.1101/gr.278418.123
  5. Method: Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE
    • Yingxin Lin,
    • Tung-Yu Wu,
    • Xi Chen,
    • Sheng Wan,
    • Brian Chao,
    • Jingxue Xin,
    • Jean Y.H. Yang,
    • Wing H. Wong,
    • and Y.X. Rachel Wang
    Genome Res. January 2024 34: 119-133; Published in Advance December 15, 2023, doi:10.1101/gr.277960.123
    OPEN ACCESS ARTICLE
  6. Resource: Single-nucleus transcriptomic mapping uncovers targets for traumatic brain injury
    • Qiuyun Yang,
    • Lingxuan Zhang,
    • Manrui Li,
    • Yang Xu,
    • Xiaogang Chen,
    • Ruixuan Yuan,
    • Xiaofeng Ou,
    • Min He,
    • Miao Liao,
    • Lin Zhang,
    • Hao Dai,
    • Meili Lv,
    • Xiaoqi Xie,
    • Weibo Liang,
    • and Xiameng Chen
    Genome Res. October 2023 33: 1818-1832; Published in Advance September 20, 2023, doi:10.1101/gr.277881.123
  7. Method: Latent feature extraction with a prior-based self-attention framework for spatial transcriptomics
    • Zhen Li,
    • Xiaoyang Chen,
    • Xuegong Zhang,
    • Rui Jiang,
    • and Shengquan Chen
    Genome Res. October 2023 33: 1757-1773; Published in Advance October 30, 2023, doi:10.1101/gr.277891.123
    OPEN ACCESS ARTICLE
  8. Resource: An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants
    • Can Yuan,
    • Lijing Tang,
    • Thomas Lopdell,
    • Vyacheslav A. Petrov,
    • Claire Oget-Ebrad,
    • Gabriel Costa Monteiro Moreira,
    • José Luis Gualdrón Duarte,
    • Arnaud Sartelet,
    • Zhangrui Cheng,
    • Mazdak Salavati,
    • D. Claire Wathes,
    • Mark A. Crowe,
    • GplusE Consortium,
    • Wouter Coppieters,
    • Mathew Littlejohn,
    • Carole Charlier,
    • Tom Druet,
    • Michel Georges,
    • and Haruko Takeda
    Genome Res. October 2023 33: 1848-1864; Published in Advance September 26, 2023, doi:10.1101/gr.277947.123
  9. Research: SWATH-MS-based proteogenomic analysis reveals the involvement of alternative splicing in poplar upon lead stress
    • Fu-Yuan Zhu,
    • Xin Chen,
    • Yu-Chen Song,
    • Lydia Pui Ying Lam,
    • Yuki Tobimatsu,
    • Bei Gao,
    • Mo-Xian Chen,
    • and Fu-Liang Cao
    Genome Res. March 2023 33: 371-385; Published in Advance March 24, 2023, doi:10.1101/gr.277473.122
  10. Research: Relative contributions of sex hormones, sex chromosomes, and gonads to sex differences in tissue gene regulation
    • Montgomery Blencowe,
    • Xuqi Chen,
    • Yutian Zhao,
    • Yuichiro Itoh,
    • Caden N. McQuillen,
    • Yanjie Han,
    • Benjamin L. Shou,
    • Rebecca McClusky,
    • Karen Reue,
    • Arthur P. Arnold,
    • and Xia Yang
    Genome Res. May 2022 32: 807-824; Published in Advance April 8, 2022, doi:10.1101/gr.275965.121
    OPEN ACCESS ARTICLE
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