Searching journal content for William Stafford Noble in author.

Displaying results 1-10 of 19
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  1. Method: Multicondition and multimodal temporal profile inference during mouse embryonic development
    • Ran Zhang,
    • Chengxiang Qiu,
    • Galina N. Filippova,
    • Gang Li,
    • Jay Shendure,
    • Jean-Philippe Vert,
    • Xinxian Deng,
    • William Stafford Noble,
    • and Christine M. Disteche
    Genome Res. October 2025 35: 2339-2351; Published in Advance August 14, 2025, doi:10.1101/gr.279997.124
    OPEN ACCESS ARTICLE
  2. Method: DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools
    • Anupama Jha,
    • Stephanie C. Bohaczuk,
    • Yizi Mao,
    • Jane Ranchalis,
    • Benjamin J. Mallory,
    • Alan T. Min,
    • Morgan O. Hamm,
    • Elliott Swanson,
    • Danilo Dubocanin,
    • Connor Finkbeiner,
    • Tony Li,
    • Dale Whittington,
    • William Stafford Noble,
    • Andrew B. Stergachis,
    • and Mitchell R. Vollger
    Genome Res. November 2024 34: 1976-1986; Published in Advance June 7, 2024, doi:10.1101/gr.279095.124
  3. Method: Systematic identification of interchromosomal interaction networks supports the existence of specialized RNA factories
    • Borislav Hrisimirov Hristov,
    • William Stafford Noble,
    • and Alessandro Bertero
    Genome Res. October 2024 34: 1610-1623; Published in Advance September 25, 2024, doi:10.1101/gr.278327.123
  4. Resource: Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes
    • Timothy J. Durham,
    • Riza M. Daza,
    • Louis Gevirtzman,
    • Darren A. Cusanovich,
    • Olubusayo Bolonduro,
    • William Stafford Noble,
    • Jay Shendure,
    • and Robert H. Waterston
    Genome Res. October 2021 31: 1952-1969; Published in Advance April 22, 2021, doi:10.1101/gr.271791.120
    OPEN ACCESS ARTICLE
  5. Method: HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
    • Tao Yang,
    • Feipeng Zhang,
    • Galip Gürkan Yardımcı,
    • Fan Song,
    • Ross C. Hardison,
    • William Stafford Noble,
    • Feng Yue,
    • and Qunhua Li
    Genome Res. November 2017 27: 1939-1949; Published in Advance August 30, 2017, doi:10.1101/gr.220640.117
  6. Research: Comprehensive identification and analysis of human accelerated regulatory DNA
    • Rachel M. Gittelman,
    • Enna Hun,
    • Ferhat Ay,
    • Jennifer Madeoy,
    • Len Pennacchio,
    • William S. Noble,
    • R. David Hawkins,
    • and Joshua M. Akey
    Genome Res. September 2015 25: 1245-1255; Published in Advance June 23, 2015, doi:10.1101/gr.192591.115
  7. Research: Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program
    • Vishnu Dileep,
    • Ferhat Ay,
    • Jiao Sima,
    • Daniel L. Vera,
    • William S. Noble,
    • and David M. Gilbert
    Genome Res. August 2015 25: 1104-1113; Published in Advance May 20, 2015, doi:10.1101/gr.183699.114
  8. Method: Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression
    • Maxwell W. Libbrecht,
    • Ferhat Ay,
    • Michael M. Hoffman,
    • David M. Gilbert,
    • Jeffrey A. Bilmes,
    • and William Stafford Noble
    Genome Res. April 2015 25: 544-557; Published in Advance February 12, 2015, doi:10.1101/gr.184341.114
  9. Research: Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
    • Ferhat Ay,
    • Evelien M. Bunnik,
    • Nelle Varoquaux,
    • Sebastiaan M. Bol,
    • Jacques Prudhomme,
    • Jean-Philippe Vert,
    • William Stafford Noble,
    • and Karine G. Le Roch
    Genome Res. June 2014 24: 974-988; Published in Advance March 26, 2014, doi:10.1101/gr.169417.113
  10. Method: Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
    • Ferhat Ay,
    • Timothy L. Bailey,
    • and William Stafford Noble
    Genome Res. June 2014 24: 999-1011; Published in Advance February 5, 2014, doi:10.1101/gr.160374.113
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