Searching journal content for Wei Li in author.

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  1. Method: Analysis of alternative polyadenylation from single-cell RNA-seq using scDaPars reveals cell subpopulations invisible to gene expression
    • Yipeng Gao,
    • Lei Li,
    • Christopher I. Amos,
    • and Wei Li
    Genome Res. October 2021 31: 1856-1866; Published in Advance May 25, 2021, doi:10.1101/gr.271346.120
  2. Research: Genome-wide mapping reveals R-loops associated with centromeric repeats in maize
    • Yang Liu,
    • Qian Liu,
    • Handong Su,
    • Kunpeng Liu,
    • Xue Xiao,
    • Wei Li,
    • Qianwen Sun,
    • James A. Birchler,
    • and Fangpu Han
    Genome Res. August 2021 31: 1409-1418; Published in Advance July 9, 2021, doi:10.1101/gr.275270.121
  3. Corrigendum: Corrigendum: 3′ UTR lengthening as a novel mechanism in regulating cellular senescence
    • Meng Chen,
    • Guoliang Lyu,
    • Miao Han,
    • Hongbo Nie,
    • Ting Shen,
    • Wei Chen,
    • Yichi Niu,
    • Yifan Song,
    • Xueping Li,
    • Huan Li,
    • Xinyu Chen,
    • Ziyue Wang,
    • Zheng Xia,
    • Wei Li,
    • Xiao-Li Tian,
    • Chen Ding,
    • Jun Gu,
    • Yufang Zheng,
    • Xinhua Liu,
    • Jinfeng Hu,
    • Gang Wei,
    • Wei Tao,
    • and Ting Ni
    Genome Res. September 2020 30: 1376-1; doi:10.1101/gr.270165.120
    OPEN ACCESS ARTICLE
  4. Method: AIDE: annotation-assisted isoform discovery with high precision
    • Wei Vivian Li,
    • Shan Li,
    • Xin Tong,
    • Ling Deng,
    • Hubing Shi,
    • and Jingyi Jessica Li
    Genome Res. December 2019 29: 2056-2072; Published in Advance November 6, 2019, doi:10.1101/gr.251108.119
  5. Method: Profiling the long noncoding RNA interaction network in the regulatory elements of target genes by chromatin in situ reverse transcription sequencing
    • Shilin Zhang,
    • Yichen Wang,
    • Lin Jia,
    • Xue Wen,
    • Zhonghua Du,
    • Cong Wang,
    • Yajing Hao,
    • Dehai Yu,
    • Lei Zhou,
    • Naifei Chen,
    • Jingcheng Chen,
    • Huiling Chen,
    • Hui Zhang,
    • Ilkay Celik,
    • Günhan Gülsoy,
    • Jianjun Luo,
    • Baoming Qin,
    • Xueling Cui,
    • Zhonghui Liu,
    • Songling Zhang,
    • Miguel A. Esteban,
    • Ferhat Ay,
    • Wei Xu,
    • Runsheng Chen,
    • Wei Li,
    • Andrew R. Hoffman,
    • Ji-Fan Hu,
    • and Jiuwei Cui
    Genome Res. September 2019 29: 1521-1532; Published in Advance July 17, 2019, doi:10.1101/gr.244996.118
    OPEN ACCESS ARTICLE
  6. Method: A novel synthetic-genetic-array–based yeast one-hybrid system for high discovery rate and short processing time
    • Chung-Shu Yeh,
    • Zhifeng Wang,
    • Fang Miao,
    • Hongyan Ma,
    • Chung-Ting Kao,
    • Tzu-Shu Hsu,
    • Jhong-He Yu,
    • Er-Tsi Hung,
    • Chia-Chang Lin,
    • Chen-Yu Kuan,
    • Ni-Chiao Tsai,
    • Chenguang Zhou,
    • Guan-Zheng Qu,
    • Jing Jiang,
    • Guifeng Liu,
    • Jack P. Wang,
    • Wei Li,
    • Vincent L. Chiang,
    • Tien-Hsien Chang,
    • and Ying-Chung Jimmy Lin
    Genome Res. August 2019 29: 1343-1351; Published in Advance June 11, 2019, doi:10.1101/gr.245951.118
    OPEN ACCESS ARTICLE
  7. Method: Guide Positioning Sequencing identifies aberrant DNA methylation patterns that alter cell identity and tumor-immune surveillance networks
    • Jin Li,
    • Yan Li,
    • Wei Li,
    • Huaibing Luo,
    • Yanping Xi,
    • Shihua Dong,
    • Ming Gao,
    • Peng Xu,
    • Baolong Zhang,
    • Ying Liang,
    • Qingping Zou,
    • Xin Hu,
    • Lina Peng,
    • Dan Zou,
    • Ting Wang,
    • Hongbo Yang,
    • Cizhong Jiang,
    • Shaoliang Peng,
    • Feizhen Wu,
    • and Wenqiang Yu
    Genome Res. February 2019 29: 270-280; Published in Advance January 22, 2019, doi:10.1101/gr.240606.118
  8. Research: 3′ UTR lengthening as a novel mechanism in regulating cellular senescence
    • Meng Chen,
    • Guoliang Lyu,
    • Miao Han,
    • Hongbo Nie,
    • Ting Shen,
    • Wei Chen,
    • Yichi Niu,
    • Yifan Song,
    • Xueping Li,
    • Huan Li,
    • Xinyu Chen,
    • Ziyue Wang,
    • Zheng Xia,
    • Wei Li,
    • Xiao-Li Tian,
    • Chen Ding,
    • Jun Gu,
    • Yufang Zheng,
    • Xinhua Liu,
    • Jinfeng Hu,
    • Gang Wei,
    • Wei Tao,
    • and Ting Ni
    Genome Res. March 2018 28: 285-294; Published in Advance February 12, 2018, doi:10.1101/gr.224451.117
    OPEN ACCESS ARTICLE
  9. Research: Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis
    • Hector L. Franco,
    • Anusha Nagari,
    • Venkat S. Malladi,
    • Wenqian Li,
    • Yuanxin Xi,
    • Dana Richardson,
    • Kendra L. Allton,
    • Kaori Tanaka,
    • Jing Li,
    • Shino Murakami,
    • Khandan Keyomarsi,
    • Mark T. Bedford,
    • Xiaobing Shi,
    • Wei Li,
    • Michelle C. Barton,
    • Sharon Y.R. Dent,
    • and W. Lee Kraus
    Genome Res. February 2018 28: 159-170; Published in Advance December 22, 2017, doi:10.1101/gr.226019.117
  10. Research: Sequence determinants of improved CRISPR sgRNA design
    • Han Xu,
    • Tengfei Xiao,
    • Chen-Hao Chen,
    • Wei Li,
    • Clifford A. Meyer,
    • Qiu Wu,
    • Di Wu,
    • Le Cong,
    • Feng Zhang,
    • Jun S. Liu,
    • Myles Brown,
    • and X. Shirley Liu
    Genome Res. August 2015 25: 1147-1157; Published in Advance June 10, 2015, doi:10.1101/gr.191452.115
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