Searching journal content for W.J. Kent in author.

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  1. Method: Co-expression networks reveal the tissue-specific regulation of transcription and splicing
    • Ashis Saha,
    • Yungil Kim,
    • Ariel D.H. Gewirtz,
    • Brian Jo,
    • Chuan Gao,
    • Ian C. McDowell,
    • The GTEx Consortium,
    • Barbara E. Engelhardt,
    • and Alexis Battle
    Genome Res. November 2017 27: 1843-1858; Published in Advance October 11, 2017, doi:10.1101/gr.216721.116
    OPEN ACCESS ARTICLE
  2. Method: Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
    • Fan Yang,
    • Jiebiao Wang,
    • The GTEx Consortium,
    • Brandon L. Pierce,
    • and Lin S. Chen
    Genome Res. November 2017 27: 1859-1871; Published in Advance October 11, 2017, doi:10.1101/gr.216754.116
  3. Resource: Alignathon: a competitive assessment of whole-genome alignment methods
    • Dent Earl,
    • Ngan Nguyen,
    • Glenn Hickey,
    • Robert S. Harris,
    • Stephen Fitzgerald,
    • Kathryn Beal,
    • Igor Seledtsov,
    • Vladimir Molodtsov,
    • Brian J. Raney,
    • Hiram Clawson,
    • Jaebum Kim,
    • Carsten Kemena,
    • Jia-Ming Chang,
    • Ionas Erb,
    • Alexander Poliakov,
    • Minmei Hou,
    • Javier Herrero,
    • William James Kent,
    • Victor Solovyev,
    • Aaron E. Darling,
    • Jian Ma,
    • Cedric Notredame,
    • Michael Brudno,
    • Inna Dubchak,
    • David Haussler,
    • and Benedict Paten
    Genome Res. December 2014 24: 2077-2089; Published in Advance October 1, 2014, doi:10.1101/gr.174920.114
    OPEN ACCESS ARTICLE
  4. Method: Centromere reference models for human chromosomes X and Y satellite arrays
    • Karen H. Miga,
    • Yulia Newton,
    • Miten Jain,
    • Nicolas Altemose,
    • Huntington F. Willard,
    • and W. James Kent
    Genome Res. April 2014 24: 697-707; Published in Advance February 5, 2014, doi:10.1101/gr.159624.113
  5. RESOURCE: 28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
    • Webb Miller,
    • Kate Rosenbloom,
    • Ross C. Hardison,
    • Minmei Hou,
    • James Taylor,
    • Brian Raney,
    • Richard Burhans,
    • David C. King,
    • Robert Baertsch,
    • Daniel Blankenberg,
    • Sergei L. Kosakovsky Pond,
    • Anton Nekrutenko,
    • Belinda Giardine,
    • Robert S. Harris,
    • Svitlana Tyekucheva,
    • Mark Diekhans,
    • Thomas H. Pringle,
    • William J. Murphy,
    • Arthur Lesk,
    • George M. Weinstock,
    • Kerstin Lindblad-Toh,
    • Richard A. Gibbs,
    • Eric S. Lander,
    • Adam Siepel,
    • David Haussler,
    • and W. James Kent
    Genome Res. December 2007 17: 1797-1808; Published in Advance November 5, 2007, doi:10.1101/gr.6761107
  6. ARTICLE: Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
    • Elliott H. Margulies,
    • Gregory M. Cooper,
    • George Asimenos,
    • Daryl J. Thomas,
    • Colin N. Dewey,
    • Adam Siepel,
    • Ewan Birney,
    • Damian Keefe,
    • Ariel S. Schwartz,
    • Minmei Hou,
    • James Taylor,
    • Sergey Nikolaev,
    • Juan I. Montoya-Burgos,
    • Ari Löytynoja,
    • Simon Whelan,
    • Fabio Pardi,
    • Tim Massingham,
    • James B. Brown,
    • Peter Bickel,
    • Ian Holmes,
    • James C. Mullikin,
    • Abel Ureta-Vidal,
    • Benedict Paten,
    • Eric A. Stone,
    • Kate R. Rosenbloom,
    • W. James Kent,
    • Gerard G. Bouffard,
    • Xiaobin Guan,
    • Nancy F. Hansen,
    • Jacquelyn R. Idol,
    • Valerie V.B. Maduro,
    • Baishali Maskeri,
    • Jennifer C. McDowell,
    • Morgan Park,
    • Pamela J. Thomas,
    • Alice C. Young,
    • Robert W. Blakesley,
    • Donna M. Muzny,
    • Erica Sodergren,
    • David A. Wheeler,
    • Kim C. Worley,
    • Huaiyang Jiang,
    • George M. Weinstock,
    • Richard A. Gibbs,
    • Tina Graves,
    • Robert Fulton,
    • Elaine R. Mardis,
    • Richard K. Wilson,
    • Michele Clamp,
    • James Cuff,
    • Sante Gnerre,
    • David B. Jaffe,
    • Jean L. Chang,
    • Kerstin Lindblad-Toh,
    • Eric S. Lander,
    • Angie Hinrichs,
    • Heather Trumbower,
    • Hiram Clawson,
    • Ann Zweig,
    • Robert M. Kuhn,
    • Galt Barber,
    • Rachel Harte,
    • Donna Karolchik,
    • Matthew A. Field,
    • Richard A. Moore,
    • Carrie A. Matthewson,
    • Jacqueline E. Schein,
    • Marco A. Marra,
    • Stylianos E. Antonarakis,
    • Serafim Batzoglou,
    • Nick Goldman,
    • Ross Hardison,
    • David Haussler,
    • Webb Miller,
    • Lior Pachter,
    • Eric D. Green,
    • and Arend Sidow
    Genome Res. June 2007 17: 760-774; doi:10.1101/gr.6034307
    OPEN ACCESS ARTICLE
  7. Methods: Reconstructing contiguous regions of an ancestral genome
    • Jian Ma,
    • Louxin Zhang,
    • Bernard B. Suh,
    • Brian J. Raney,
    • Richard C. Burhans,
    • W. James Kent,
    • Mathieu Blanchette,
    • David Haussler,
    • and Webb Miller
    Genome Res. December 2006 16: 1557-1565; Published in Advance September 18, 2006, doi:10.1101/gr.5383506
    OPEN ACCESS ARTICLE
  8. RESOURCE: Galaxy: A platform for interactive large-scale genome analysis
    • Belinda Giardine,
    • Cathy Riemer,
    • Ross C. Hardison,
    • Richard Burhans,
    • Laura Elnitski,
    • Prachi Shah,
    • Yi Zhang,
    • Daniel Blankenberg,
    • Istvan Albert,
    • James Taylor,
    • Webb Miller,
    • W. James Kent,
    • and Anton Nekrutenko
    Genome Res. October 2005 15: 1451-1455; Published in Advance September 16, 2005, doi:10.1101/gr.4086505
  9. ARTICLE: Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
    • Adam Siepel,
    • Gill Bejerano,
    • Jakob S. Pedersen,
    • Angie S. Hinrichs,
    • Minmei Hou,
    • Kate Rosenbloom,
    • Hiram Clawson,
    • John Spieth,
    • LaDeana W. Hillier,
    • Stephen Richards,
    • George M. Weinstock,
    • Richard K. Wilson,
    • Richard A. Gibbs,
    • W. James Kent,
    • Webb Miller,
    • and David Haussler
    Genome Res. August 2005 15: 1034-1050; Published in Advance July 15, 2005, doi:10.1101/gr.3715005
  10. RESOURCE: Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner
    • Mathieu Blanchette,
    • W. James Kent,
    • Cathy Riemer,
    • Laura Elnitski,
    • Arian F.A. Smit,
    • Krishna M. Roskin,
    • Robert Baertsch,
    • Kate Rosenbloom,
    • Hiram Clawson,
    • Eric D. Green,
    • David Haussler,
    • and Webb Miller
    Genome Res. April 2004 14: 708-715; doi:10.1101/gr.1933104
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